Transcription Factor
| Accessions: | T12408 (AthalianaCistrome v4_May2016), Q9M1L9 (JASPAR 2024) |
| Names: | AT3G42860, T12408;, CCHC-type, Q9M1L9_ARATH, Uncharacterized protein At3g42860, Uncharacterized protein F18P9_20, Zinc knuckle, Zinc knuckle (CCHC-type |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:zf-GRF |
| Length: | 372 |
| Pfam Domains: | 95-138 GRF zinc finger 163-205 GRF zinc finger 235-254 Zinc knuckle 238-253 Zinc knuckle 266-293 Zinc knuckle 270-284 Zinc knuckle 301-323 Zinc knuckle 305-320 Zinc knuckle 338-363 Zinc knuckle 342-357 Zinc knuckle |
| Sequence: (in bold interface residues) | 1 MKKITIPVESLDEEDDFLLQLAAIEAEAAAKRPRVSSIPEGPYMAALKGSKSDQWQQSPL 60 61 NPASKSRSVAVTTGGFQRSDGGGGVAGEQDFPEKSCPCGVGICLILTSNTPKNPGRKFYK 120 121 CPNREENGGCGFFQWCDAVQSSGTSTTTSNSYGNGNDTKFPDHQCPCGAGLCRVLTAKTG 180 181 ENVGRQFYRCPVFEGSCGFFKWCNDNVVSSPTSYSVTKNSNFGDSDTRGYQNAKTGTPCY 240 241 KCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSS 300 301 SSSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQ 360 361 TTNTPGKRQRQY |
| Interface Residues: | 237, 248, 250, 251, 281 |
| 3D-footprint Homologues: | 2jzw_A, 8ity_P |
| Binding Motifs: | M0850 maAAGTCAACG UN0354.1 aaAGTCAACgwh UN0354.2 aAGTCAACg |
| Binding Sites: | UN0354.1.1 UN0354.1.10 / UN0354.1.9 UN0354.1.10 / UN0354.1.11 / UN0354.1.12 / UN0354.1.13 / UN0354.1.3 UN0354.1.11 / UN0354.1.12 UN0354.1.13 / UN0354.1.14 UN0354.1.14 / UN0354.1.15 UN0354.1.15 / UN0354.1.16 UN0354.1.16 / UN0354.1.17 UN0354.1.18 UN0354.1.17 / UN0354.1.19 UN0354.1.2 UN0354.1.18 / UN0354.1.20 UN0354.1.4 UN0354.1.5 UN0354.1.6 UN0354.1.6 / UN0354.1.7 UN0354.1.7 / UN0354.1.8 UN0354.1.8 / UN0354.1.9 UN0354.1.19 UN0354.1.20 UN0354.2.10 / UN0354.2.12 / UN0354.2.3 / UN0354.2.4 / UN0354.2.5 / UN0354.2.8 UN0354.2.16 / UN0354.2.9 UN0354.2.14 / UN0354.2.2 UN0354.2.1 UN0354.2.11 / UN0354.2.7 UN0354.2.13 UN0354.2.15 / UN0354.2.18 UN0354.2.17 UN0354.2.19 UN0354.2.20 UN0354.2.6 |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.