Transcription Factor

						

			
Accessions: T073862_1.02 (CISBP 1.02)

			
Names: lin54, T073862_1.02;
Organisms: Danio rerio
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:CxC
Length: 771
Pfam Domains:   545-582 Tesmin/TSO1-like CXC domain
  617-657 Tesmin/TSO1-like CXC domain
Sequence: 
(in bold interface residues)		   1 MDVVSPELNSLLPDEIMDTEAMDEDPPASHLTPPPQSAPESAQVPMETEVPEIISICPTT   60
  61 ASMQAISTNAKSTTSSTTQLLLTPSSSSSTTTKNATPTLPKIPSLSVPPNHQLIINKVAA  120
 121 DGKSPGGAVIKQEGQKLLVAGLSKTGQPIMLALPHAWNKPATSQGSGDAKSQPTQIKMVT  180
 181 AMGKPVIAVSSASQLVASSTPLQAQHLKTLQITKKPPVSTAGPMITKLIITKALNNKVLS  240
 241 SPGSVSPVVTGRVVSQSTPLTPPRTIAIGETISTVPQNAATNSKVAISPLKSPSKLTVVS  300
 301 VTSQSSNSPQKSVTLPLNVALGQQILTVQQSAVTSPAKAGSSQSTTQTVKPVQTVTVPTS  360
 361 QFKTIIPLTTPPNVQQIQVPGSRFHYVRLVTATTGSSTVQTGGSTNTNPSIQPAKPVMMN  420
 421 AAVRMSVPIVPAQTVKQVVPKPLSSAAQVVTTSQTPQRLIMPATHLPQIQPNLTNLPPGT  480
 481 VLAPAHGSGNVGYAVLPAPYVTQIPQPAFVTLTSSSTFSTATPSQAQARLSLNGLSTSEA  540
 541 NSRPRKPCNCTRSQCLKLYCDCFANGEFCNNCNCVNCFNNLDHESERLKAIKACLDRNPV  600
 601 AFKPKIGKGKEGESDRRHSKGCNCKKSGCLKNYCECYEAKIMCSSICKCMGCKNFEESPE  660
 661 RKTLMHLADAAEVRVQQQTAAKTKLSSQISDLLTRTTPAITSGGGKLPYTFVTKEVAEAT  720
 721 CDCLLEQAEQAELTNQPQAMAERLILEEFGRCLHRIISFAGKAKTDCPINC
Interface Residues: 237, 246, 248, 251, 252, 258, 559, 633
3D-footprint Homologues: 6chv_D, 5fd3_A, 4rkh_F
Binding Motifs: M0593_1.02 wTTTraaw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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