Transcription Factor
| Accessions: | T138185_1.02 (CISBP 1.02) |
| Names: | B5BV17_CHICK, T138185_1.02; |
| Organisms: | Gallus gallus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Rel |
| Length: | 1437 |
| Pfam Domains: | 206-361 Rel homology domain (RHD) |
| Sequence: (in bold interface residues) | 1 MGGACSSFTTSSSPTIYSTSVTDSKAMQVESCSSAVGVSNRGVSEKQLTSNTVQQQQSTP 60 61 KRHTVLYISPPPEDLLDNSRMSCQDEGCGLESEQSCSMWMEDSPSNFSNMSTSSYNDNTE 120 121 VPRKSRKRNPKQRPGIKRRDCEESNMDIFDADSAKAPHYVLSQLSTDSKGNSKAGNGASE 180 181 SQKGAGGKKTPMLCGQYPTKSEGKELKIVVQPETQHRARYLTEGSRGSVKDRTQQGFPTV 240 241 KLEGHNEPVVLQVFVGNDSGRVKPHGFYQACRVTGRNTTPCKEVDIEGTTVIEVGLDPSN 300 301 NMTLAVDCVGILKLRNADVEARIGIAGSKKKSTRARLVFRVNITRKDGSTLTLQTPSSPI 360 361 LCTQPAGVPEILKKSLHSCSVKGEEEVFLIGKNFLKGTKVIFQENVSDENSWKAEAEIDM 420 421 ELFHQNHLIVKVPPYHDQRITSAVSVGIYVVTNAGRSHDVQQFTYTPDTSAGTLNVNVKK 480 481 EISSPAQHCSFEEAIKVMKATSCNLEKVNILPSALITPLMPSSMIKNEDVSPMEVSAEKR 540 541 SPPVFKASKVVGPTQQTLESSMPGIPTSASHLPSENEKQQQIQPKVYNPETLTTIQTQDI 600 601 TQPGSFSSVSTPGQLQNSDTLLQQAAQFQTRDSQTREVLQSDGTVVTLSQLTDASQQQQS 660 661 TLPEPAQALQQQISSSIFSSASGVSQLQNTIQQLQAGNFPTNTATGSNRNVDLVQQVLEA 720 721 QQQLSSVLFSGSDSNEDVQDQLNADIFQQVSQIQNTVNPGIFSSSDTAVHSRPENLLPGR 780 781 GENVHPQPENTLSNQQQQQQQQQQQAMETSAAMVIGIQQNICQAATQMQSDLFSSTTSGN 840 841 GALQQSPVYQQASHIMSGLSTSEDMQMQCELFSSSPGVSGSETNSTAQQQVSNNGPTIFQ 900 901 ASSSADGEEASGQSKQMQSSVFQTMVQMQHSGESQSQVNLFSSTKNMMTVQPSGAQQQGG 960 961 GLFQQGGEIMSIQPANFMQQSPHSQAQLFHSQNPIGDTQNISQETQGSIFHSPNSIVHNQ 1020 1021 TNANSSDQLQPPMFHSQSTMGVLQSSSVPQDQQSANMFLPQSSISNPATQEEQMSFFTNP 1080 1081 SSISPLQAAANTEQPTSFQQQTQISHIQSSMLPQEQPQTQPAQQGLFQPQVPLGSIQSSS 1140 1141 IPQNQQGAIFQPQHSIVAIQSSPPSQEQPQQQQQNMMFSNQNAMSTIASQKQNMIFNPNQ 1200 1201 NPVTNQEQQGQSIFHPQTNMAPINQEQQPMQFQSQTTVSSLQNPGSSQAEAQQPAIFHNS 1260 1261 PQIQLVQGSPSSQEQQVTLFISSASMSALQNSMSQQDLQQSPMYSSQNSMAGMQGTASPP 1320 1321 QQQASLFHNTAGGAINQLQNSPASSQQTSGIFLFGIQNNCSQLLPSGPAALPDELMAISQ 1380 1381 PGQPQSEGQAAVPALLSQQIPETSPLPSAMAPSQNIEKIDDLLVSLQNQGNNMTGSF |
| Interface Residues: | 217, 219, 220, 222, 223, 226, 313, 330, 364, 366, 393, 454, 455 |
| 3D-footprint Homologues: | 2ram_A, 1imh_C, 7cli_B, 1p7h_L, 1a3q_A, 2o61_A, 1a66_A |
| Binding Motifs: | M1519_1.02 atTTTCCAyw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.