Transcription Factor
| Accessions: | T138992_1.02 (CISBP 1.02) |
| Names: | daf-19, T138992_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:RFX |
| Length: | 661 |
| Pfam Domains: | 113-180 RFX DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MLDPTKISLHSSSVAYGEESQDEMEVIQHSTDDPNGTREEFDYNQIEYGNAVTPNGTYTL 60 61 YAPDSNYAPYYQYSNNMQSSPQDNAPYLVPAPQSPVSIDDADSINLPNNQRASPATVNWL 120 121 FENYEIGEGSLPRCELYDHYKKHCAEHRMDPVNAASFGKLIRSVFHNLKTRRLGTRGNSK 180 181 YHYYGIRLKDSSTLHSMQHPQPQIIQNTYTPPMQLPQRDAYADTVNQVAAIKYMDVEIPD 240 241 KRARKDNSSSSSSCRDSVSPCMDLPAQQTIQHTPVHSVIPSTQQPAPLHNNNVVSYVVTE 300 301 SDKAAMGKIDLPIVPFPDKDALMATIGFRKLGVGEEELNSLIDIYEILCREILALIKNID 360 361 FASVEDTWSKFWSGNFGVDRDHISALCTLDQVQDYIIEVDLALYQTIVDTLIPNVLLSEL 420 421 STGMTQTCRTFAKNIDVYLRKSLMLANLGEFFVKKKIQAIKYLQQGLKRYTSLNHLAHAS 480 481 RGVLMKPEQVQQMYQDYIRVDINTVHQQAGWICGCDSVMVHHVNNAFKHNLQRMSAMEVW 540 541 AEWLESIVDQVLAKYHDKPANVIANVGKQFLLNWSFYTSMIIRDLTLRSAMSFGSFTLIR 600 601 LLADDYMYYLIESKIAKAGKQQLITVIRADKDWPLTTNPQEYIVVANDNDEDLDLEKAGL 660 661 L |
| Interface Residues: | 155, 159, 172, 176, 181 |
| 3D-footprint Homologues: | 1dp7_P |
| Binding Motifs: | M1534_1.02 ChTAGCaACs |
| Related annotations: | PaperBLAST |
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