Transcription Factor

Accessions: UP00440A (UniPROBE 20160601)
Names: None, PFE0840c, putative, transcription factor with AP2 domain(s)
Organisms: Plasmodium falciparum
Libraries: UniPROBE 20160601 1
1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed]
Description: transcription factor with AP2 domain(s), putative: putative Plasmodium falciparum transcription factor, AP2 domain
Length: 60
Pfam Domains: 2-53 AP2 domain
Sequence:
(in bold interface residues)
1 NSRIVGVHYDRKQFRWKATWYTSHGRRCAKYYPVKQYGYLEAKKMAIECRKAYNLYKKLK 60
Interface Residues: 11, 13, 16, 17
3D-footprint Homologues: 6wmp_C, 7mid_D
Binding Motifs: UP00440A_1 ChwysmdTGACATCAwrmrwag
Binding Sites: TGACATCA
ACAAATAA
CATCTGTA
CGTCATCA
TGTCAACA
TTTCGAAA
AAACAAAT
AAATAAAG
AGATGATG
ATGAAGTA
ATGATGAA
ATGATGTC
CATCATAA
CATCATAC
CATCTTCG
CGACATCG
GATGACGA
GATGCAGC
GATGTCAC
TATGATGA
Publications: Campbell TL, De Silva EK, Olszewski KL, Elemento O, Llinás M. Identification and genome-wide prediction of DNA binding specificities for the ApiAP2 family of regulators from the malaria parasite. PLoS Pathog : (2010). [Pubmed]
Related annotations: PaperBLAST

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