Transcription Factor
| Accessions: | T139190_1.02 (CISBP 1.02) |
| Names: | T139190_1.02;, XP_002157607.1 |
| Organisms: | Hydra magnipapillata |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:RFX |
| Length: | 1332 |
| Pfam Domains: | 97-163 RFX DNA-binding domain 934-1105 DDE superfamily endonuclease 937-1096 DDE superfamily endonuclease |
| Sequence: (in bold interface residues) | 1 MVEVNMERGSGFNYGSTHDNTIYSQTSNMPTFMESSHGVSHNHLYQGYSNQQNHPGSMSV 60 61 GVSAQAIGVAHQAQYLQPGQSANQRVPISHTTRASPMTVQWLIENYETADGVSLPRSTLY 120 121 SHYLRHCSESKIDAVNAASFGKLIRSVFLGLKTRRLGTRGNSKYHYYGIRVKPNSPLSRL 180 181 TDDTQVALRAQPVASKRTIGSASYDQTGARVEATSTNNEGMTAASYQQYLGDTSEGLPEV 240 241 PAIDLTESLPEGVSKLDVTSFGNYYRSHCEALLEVISNLQFDLVEALWQAFYRSPAAADK 300 301 TDNGTLESHDYSISKTMLIVLCKYKPMQEFIKETDYLLYQKLVTLLVPDVLRAVPSTLNS 360 361 GNQKLCEKTIGSASYDQTGARVEATSTNNEGMTAASYQQYLGDTSEGLPEVPAIDLTESL 420 421 PEGVSKLDVTSFGNYYRSHCEALLEVISNLQFDLVEALWQAFYRSPAAADKTDNGTLESH 480 481 DYSISKTMLIVLCKYKPMQEFIKETDYLLYQKLVTLLVPDVLRAVPSTLTQAIRNFAKSL 540 541 ENMLIGSMSEMPKEIVNIKVAAASAFSQTLRRYTSLNHLAQAARAVLQNPQQINQMWSDL 600 601 NKVDFNNVQEQSSWVCQCDEALIQKLEEDFKRTLSQQQSLEEWAQWLESVVSMVLEQHQG 660 661 RDSYPKAARQFLLNWSFYSSMIIRDLTLRSAASFGSFHLIRLLYDEYMFYLIENKVAAHT 720 721 GKSPLSVMAECVNNSMLHSFNDDDDDGESSNDEGSASPPHAQSRSVDLSESILSQTLVRN 780 781 DEPPLKRTKLEIFRKVRVQVLSTEKGLPKKVQKLRGGLEGNELKRGVFTDLQEGLLEQYV 840 841 TKASDIYYGLSPKEVRKLAYQYGKANSIKMPHNWSANEAAGEDWFSAYLKRHKKLSIRKP 900 901 EATSQARVSRFNPTNVQKFYNNLQTILNRLKLENGDIWNMDETGITTVQIPDHIVARKGF 960 961 KQIGRVTSAERGNLVTVAVAVSASGNSIPPFFIFPRVKFKSYFLNGAPDGSAGAANPSGW 1020 1021 MTEVQFLQFSHHFVKYARTTKERPVLLLLDNHDSHLSVEALDYFKENGVSVCSFPPHCSH 1080 1081 KLQPLDRSVFGPFKKYTNTACDAWMTMHPGSTMSIYSLPGIGDHVGLRSCWSQIILVSDH 1140 1141 VGLRSCWSQIILVSDHVGLRSCWSQIMPVSDHVDLRSCRSQIMLVSDHVGLRSCWSQIML 1200 1201 VSDHIGLRSCWSQIMLVSDHVGLRSCWSQIMLVSDHVGLRSCRSQIMLVSDHVDLRLCLK 1260 1261 TVLIKRGARQPLIIDGNNEKVHYTVNNCCNANGDYLSLFAVYETKHFQTQCGIGRLSGLH 1320 1321 YTASPSGWMEED |
| Interface Residues: | 138, 142, 155, 159, 164, 1277, 1279 |
| 3D-footprint Homologues: | 1dp7_P, 8gh6_A |
| Binding Motifs: | M1539_1.02 cchtrgywAC |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.