Transcription Factor
| Accessions: | T057635_1.02 (CISBP 1.02) |
| Names: | F13H6.1, T057635_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 694 |
| Pfam Domains: | 499-520 C2H2-type zinc finger 499-520 Zinc finger, C2H2 type 512-536 Zinc-finger double domain 526-548 C2H2-type zinc finger 526-548 Zinc finger, C2H2 type 556-578 Zinc finger, C2H2 type 556-578 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSSGRSKSQTIETSSAGRRRRKANSEVDSGAEEPTATSSSDDKSDYRLDLKKRLTTFLTS 60 61 NSQMASSDSGVSGVESTVEHDLSELKASDSPMSHDGADSPRPELDRTDIVVCGECHTSFS 120 121 LSCFSNFIEHKVSNCGGKLTPSDDCEVTPRNFDRSRRRTFNPAALIRCGRSTSANALLPN 180 181 YNMDVTTDTNDLGSSSKSLTCCNCKERFGDVWTLLKHSYDIHGLRVCQEAIPESDVSVTS 240 241 TSSPTSNESMHMSSRYNHNDTSSKIMHQTIKSESTMMNSFCSERLKEIVTRAGEQDQKPL 300 301 MALRRLMPSEETEEEQVSAFTSTSLLNSRASQPQLPTVSSSAGFQTSGSMPNVWMQPSML 360 361 AAMQEYYASIQQMPYPMTNSTAVALLNISNNLQQQQQQQQQLQQQQQNLIAAQPQVATPQ 420 421 PPAPTPLFQSLNRLSTADESSYTPRPASVAIRRRASPEEELTPPRKSMKIEEEDQLIVVD 480 481 DGELAEPAARKPNNIKKERCNFCNKVFTNRSNLIVHLRSHTGEKPYKCQLCPYACAQSSK 540 541 LTRHMRTHGQQGKETYHCYICRMPFSVHSTLEKHMRKCVVSTQGRREGGSPPERSIRPTP 600 601 SALAEATSLLALSAPSISVPPQPQASTVGQNQSQSHQIVLNWLHALNASNSTPTATSKED 660 661 MIEADEDMEETEASDLQSHQPLTSESNQIATVAN |
| Interface Residues: | 469, 480, 481, 483, 486, 487, 488, 490, 491, 508, 509, 510, 511, 512, 514, 515, 516, 517, 518, 521, 536, 537, 538, 539, 540, 541, 542, 543, 544, 547, 566, 567, 568, 569, 570, 571, 572, 573, 577 |
| 3D-footprint Homologues: | 2lt7_A, 8ssq_A, 7w1m_H, 8ssu_A, 5kkq_D, 3uk3_C, 2kmk_A, 8cuc_F, 7y3l_A, 1tf3_A, 7n5w_A, 6jnm_A, 7txc_E, 5ei9_F, 1g2f_F, 7ysf_A, 6ml4_A, 5v3j_F, 6blw_A, 1llm_D, 6u9q_A, 8gn3_A, 4x9j_A, 2gli_A, 1f2i_J, 5kl3_A, 1tf6_A, 4m9v_C, 8h9h_G, 6e94_A, 7y3m_I, 6a57_A, 2jpa_A, 1ubd_C, 5k5i_A, 5yel_A, 2drp_D, 5yj3_D, 2wbs_A |
| Binding Motifs: | M0447_1.02 rgyGGTCAry |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.