Transcription Factor

Accessions: T10527 (AthalianaCistrome v4_May2016), Q9XIN7 (JASPAR 2024)
Names: AT2G27300, NTL8, T10527;, ANAC040, NAC domain-containing protein 40, NAC40_ARATH, Protein NTM1-like 8
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:NAC
Length: 335
Pfam Domains: 14-140 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MSKEAEMSIAVSALFPGFRFSPTDVELISYYLRRKIDGDENSVAVIAEVEIYKFEPWDLP 60
61 EESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVF 120
121 HIGRAPRGERTEWIMHEYCIHGAPQDALVVCRLRKNADFRASSTQKMEDGVVQDDGYVGQ 180
181 RGGLEKEDKSYYESEHQIPNGDIAESSNVVEDQADTDDDCYAEILNDDIIKLDEEALKAS 240
241 QAFRPTNPTHQETISSESSSKRSKCGIKKESTETMNCYALFRIKNVAGTDSSWRFPNPFK 300
301 IKKDDSQRLMKNVLATTVFLAILFSFFWTVLIARN
Interface Residues: 81, 86, 88, 97, 99, 101, 121, 125, 126, 127, 130
3D-footprint Homologues: 7xp3_B, 3swp_A
Binding Motifs: M0671 kTTyCTTCwyyytsARGwA
MA1678.1 rrTTwCTTcaysgtgAAGwAAchw
MA1678.2 wtGAAGAAACctw
MA1678.3 GAAGAAAC
Binding Sites: MA1678.3.3 / MA1678.3.5
MA1678.1.11
MA1678.1.12
MA1678.1.1
MA1678.1.10
MA1678.1.13
MA1678.1.14
MA1678.1.15
MA1678.1.16
MA1678.1.17
MA1678.1.18
MA1678.1.19
MA1678.1.2
MA1678.1.20
MA1678.1.3
MA1678.1.4
MA1678.1.5
MA1678.1.6
MA1678.1.7
MA1678.1.8
MA1678.1.9
MA1678.2.8
MA1678.2.2
MA1678.2.16
MA1678.2.1
MA1678.2.10
MA1678.2.11
MA1678.2.12
MA1678.2.13
MA1678.2.14
MA1678.2.15
MA1678.2.17
MA1678.2.18
MA1678.2.19
MA1678.2.20
MA1678.2.3
MA1678.2.4
MA1678.2.5
MA1678.2.6
MA1678.2.7
MA1678.2.9
MA1678.3.14 / MA1678.3.2 / MA1678.3.7
MA1678.3.15
MA1678.3.11 / MA1678.3.12 / MA1678.3.16 / MA1678.3.4
MA1678.3.19
MA1678.3.1 / MA1678.3.20
MA1678.3.10
MA1678.3.13
MA1678.3.17
MA1678.3.18
MA1678.3.6
MA1678.3.8
MA1678.3.9
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.