Transcription Factor
| Accessions: | T10527 (AthalianaCistrome v4_May2016), Q9XIN7 (JASPAR 2024) |
| Names: | AT2G27300, NTL8, T10527;, ANAC040, NAC domain-containing protein 40, NAC40_ARATH, Protein NTM1-like 8 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 335 |
| Pfam Domains: | 14-140 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSKEAEMSIAVSALFPGFRFSPTDVELISYYLRRKIDGDENSVAVIAEVEIYKFEPWDLP 60 61 EESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERSVKSGNQVVGTKRTLVF 120 121 HIGRAPRGERTEWIMHEYCIHGAPQDALVVCRLRKNADFRASSTQKMEDGVVQDDGYVGQ 180 181 RGGLEKEDKSYYESEHQIPNGDIAESSNVVEDQADTDDDCYAEILNDDIIKLDEEALKAS 240 241 QAFRPTNPTHQETISSESSSKRSKCGIKKESTETMNCYALFRIKNVAGTDSSWRFPNPFK 300 301 IKKDDSQRLMKNVLATTVFLAILFSFFWTVLIARN |
| Interface Residues: | 81, 86, 88, 97, 99, 101, 121, 125, 126, 127, 130 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0671 kTTyCTTCwyyytsARGwA MA1678.1 rrTTwCTTcaysgtgAAGwAAchw MA1678.2 wtGAAGAAACctw MA1678.3 GAAGAAAC |
| Binding Sites: | MA1678.3.3 / MA1678.3.5 MA1678.1.11 MA1678.1.12 MA1678.1.1 MA1678.1.10 MA1678.1.13 MA1678.1.14 MA1678.1.15 MA1678.1.16 MA1678.1.17 MA1678.1.18 MA1678.1.19 MA1678.1.2 MA1678.1.20 MA1678.1.3 MA1678.1.4 MA1678.1.5 MA1678.1.6 MA1678.1.7 MA1678.1.8 MA1678.1.9 MA1678.2.8 MA1678.2.2 MA1678.2.16 MA1678.2.1 MA1678.2.10 MA1678.2.11 MA1678.2.12 MA1678.2.13 MA1678.2.14 MA1678.2.15 MA1678.2.17 MA1678.2.18 MA1678.2.19 MA1678.2.20 MA1678.2.3 MA1678.2.4 MA1678.2.5 MA1678.2.6 MA1678.2.7 MA1678.2.9 MA1678.3.14 / MA1678.3.2 / MA1678.3.7 MA1678.3.15 MA1678.3.11 / MA1678.3.12 / MA1678.3.16 / MA1678.3.4 MA1678.3.19 MA1678.3.1 / MA1678.3.20 MA1678.3.10 MA1678.3.13 MA1678.3.17 MA1678.3.18 MA1678.3.6 MA1678.3.8 MA1678.3.9 |
| Publications: | Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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