Transcription Factor
| Accessions: | GATA6 (HT-SELEX2 May2017) |
| Names: | ENSG00000141448, GATA6 |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
| Notes: | TF family: Znf_GATA experiment: HT-SELEX Hamming distance: 1 cycle: 3, TF family: Znf_GATA experiment: Methyl-HT-SELEX Hamming distance: 1 cycle: 3 |
| Length: | 143 |
| Pfam Domains: | 24-57 GATA zinc finger 78-111 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 GAPLPVPRGPSADLLEDLSESRECVNCGSIQTPLWRRDGTGHYLCNACGLYSKMNGLSRP 60 61 LIKPQKRVPSSRRLGLSCANCHTTTTTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMKKE 120 121 GIQTRKRKPKNINKSKTCSGNSN |
| Interface Residues: | 33, 34, 36, 46, 50, 87, 88, 90, 100, 104, 105, 108, 125, 127, 128 |
| 3D-footprint Homologues: | 3vd6_C, 4hc9_A, 3dfx_B, 1gat_A, 4gat_A |
| Binding Motifs: | GATA6_2 hGATAAsgATCw GATA6_methyl_1 wGATAAcrATCw |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.