Transcription Factor

						

			
Accessions: Q4H3U8 (JASPAR 2024)

			
Names: Q4H3U8_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3U8
Length: 825
Pfam Domains:   131-239 BTB/POZ domain
  637-659 Zinc finger, C2H2 type
  637-657 Zinc-finger of C2H2 type
  651-675 Zinc-finger double domain
  679-704 Zinc-finger double domain
  693-715 Zinc finger, C2H2 type
  695-714 Zinc-finger of C2H2 type
  708-731 Zinc-finger double domain
Sequence: 
(in bold interface residues)		   1 MADVIPTLKSPERTTIVQNLADLLARDAAVVSSSDDVSENEILKEDGVPEMHGASIYSER   60
  61 PRTDHQDRMEEDQPFDLSTRRSSASDILPTEGKPTTGPDPSETDVSNDEHYEANTKKGEF  120
 121 SRYLNGMMLSLNDLRLRCLLCDVIFKVQNETFHAHKAVMASCSEFCRKKFLPLLYSQDHR  180
 181 DSEILTLEIHNVSVLGFRLLLDFIYTGQLDINDVTASHIAQAAATMEMTEIADIVEKHAR  240
 241 GSMNNYLSNSDGSPSKRSELHARSLPLQGTSYSQSLDLSVKPHCKKRTSWNGMDSESKEN  300
 301 HCKPRRSSDSARSVRTQEIERVPAVDPRSPERGNPEIFNLRSGNGIINQAKQLSEQNEQT  360
 361 FSCDDSHTQHWKKKYHYLEHENQRNERKEHGSKGVYEQTRYPTKEESQYQQSLLHYSKDN  420
 421 SPNALAPQMGSGRSPQQEYQFRLQFNRLFNWMPPLSGGENLLAQRVSAFMQPQLASKPTL  480
 481 AQTQWANFLRKQPNNYQIPMSFRPDVLPFQPNFLFPRVDGTDNRNGWRVPFVPPPALSVI  540
 541 NNQYQQSTATGTRLRSQSSTNTEEPMNVDTTLPPKLETKQSPIYINSESNESLPSLEPMN  600
 601 TMNERRSSGSGEDKSDDTKSKPPCNARVRATGSSKPYKCEFCDADFNRPANLKTHMRIHS  660
 661 GEKPFQCERCNARFVQVAHLRAHVLIHTGEKPYPCTVCGTKFRHLQTLKSHLRIHTGEKP  720
 721 YSCQECRVHFRHKSQLRLHLRQKHGIQTNTKKTYKQVPGLCSADICAHIRRAQEIARSQT  780
 781 KNSNNAPFMEQSSSCSEAIKQTEQHPKSFDNPGEKMRGLNTAFSH
Interface Residues: 637, 647, 648, 649, 650, 651, 653, 654, 656, 657, 658, 660, 672, 674, 675, 676, 677, 678, 679, 681, 682, 703, 704, 705, 706, 707, 708, 709, 710, 711, 713, 714, 732, 733, 734, 735, 736, 737, 738, 739
3D-footprint Homologues: 2kmk_A, 1tf3_A, 7n5w_A, 6jnm_A, 5k5l_F, 6u9q_A, 4x9j_A, 8ssu_A, 1f2i_J, 5kkq_D, 1tf6_A, 8gn3_A, 5ei9_F, 1g2f_F, 5kl3_A, 5k5i_A, 6ml4_A, 8ssq_A, 7w1m_H, 6blw_A, 8h9h_G, 2lt7_A, 6e94_A, 7y3m_I, 7ysf_A, 2jpa_A, 1ubd_C, 2gli_A, 7y3l_A, 5yel_A, 5yj3_D, 7txc_E, 1llm_D, 2drp_D, 6a57_A, 8cuc_F, 3uk3_C, 2wbs_A, 5v3j_F, 4m9v_C
Binding Motifs: UN0443.1 mmmmmygCtTTCgAGGAAtyyy
UN0443.2 gCtTTCgAGGAA
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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