Transcription Factor

						

			
Accessions: T116756_1.02 (CISBP 1.02), T03748 (AthalianaCistrome v4_May2016)

			
Names: AT1G19000, T116756_1.02;, T03748;
Organisms: Arabidopsis thaliana
Libraries: CISBP 1.02 1, AthalianaCistrome v4_May2016 2
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]

2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related
Length: 285
Pfam Domains:   103-147 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MAAVSSSSETGDCGVTGKRDEIMLFGVRVVVDPMRKCVSLNNLSDYEKSSPEDEIPKIVT   60
  61 AGAGDGEDKNETDATVIVADGYASANDAVQISSSSGGRKRGVPWTENEHKRFLIGLQKVG  120
 121 KGDWKGISRNFVKSRTPTQVASHAQKYFLRRTNLNRRRRRSSLFDITTETVTEMAMEQDP  180
 181 TQENSPLPETNISSGQQAMQVFTDVPTKTENAPETFHLNDPYLVPVTFQAKPTFNLNTDA  240
 241 APLSLNLCLASSFNLNEQPNSRHSAFTMMPSFSDGDSNSSIIRVA
Interface Residues: 101, 137, 138, 141, 142, 145, 146
3D-footprint Homologues: 8xas_E, 6qec_A
Binding Motifs: M1318_1.02 wwyrGATaar
M0595 wwwTGGATAAgrww
M0590 wwycTTATCCAtww
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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