Transcription Factor
| Accessions: | C0Z2L5 (JASPAR 2024), T03776 (AthalianaCistrome v4_May2016), AtbZIP44 (EEADannot 2025-01-07) |
| Names: | AtbZIP44, bZIP transcription factor 44, BZP44_ARATH, AT1G75390, bZIP44, T03776;, C0Z2L5;BZP44_ARATH;AT1G75390.1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2, EEADannot 2025-01-07 3 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 3 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bZIP, family:Basic leucine zipper factors (bZIP) bZIP |
| Length: | 173 |
| Pfam Domains: | 39-85 Basic region leucine zipper 41-81 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MNNKTEMGSSTSGNCSSVSTTGLANSGSESDLRQRDLIDERKRKRKQSNRESARRSRMRK 60 61 QKHLDDLTAQVTHLRKENAQIVAGIAVTTQHYVTIEAENDILRAQVLELNHRLQSLNEIV 120 121 DFVESSSSGFGMETGQGLFDGGLFDGVMNPMNLGFYNQPIMASASTAGDVFNC |
| Interface Residues: | 40, 43, 44, 46, 47, 49, 50, 52, 53, 55, 56, 57, 59, 89, 91, 92, 107 |
| 3D-footprint Homologues: | 7wb3_B, 8k86_A, 2ayg_A, 7eu9_A, 8jsi_A |
| Binding Motifs: | M0213 / MA1337.1 dwwGmTGACGTGGCa M0224 wwGmTGACGTGGC MA1337.2 wGmTGACGTGGCa EEAD0098 yGmCACGTsd EEAD0099 tGayGrtGAtGATGA EEAD0120 hsACGTGkCa EEAD0121 CyrmGTCAkCa EEAD0122 hsACGTGKCa EEAD0123 mCACGT EEAD0124 tGmCACGTsd EEAD0125 cCACGTCAkCa |
| Binding Sites: | MA1337.1.2 MA1337.1.19 MA1337.1.20 MA1337.1.12 / MA1337.1.13 MA1337.1.10 MA1337.1.17 MA1337.1.11 MA1337.1.16 MA1337.1.3 MA1337.1.6 MA1337.1.4 MA1337.1.7 MA1337.1.5 MA1337.1.8 MA1337.1.9 MA1337.1.18 MA1337.1.1 MA1337.1.14 MA1337.1.15 MA1337.2.1 MA1337.2.10 MA1337.2.11 MA1337.2.12 MA1337.2.13 MA1337.2.14 MA1337.2.15 MA1337.2.16 MA1337.2.17 MA1337.2.18 MA1337.2.19 MA1337.2.2 MA1337.2.20 MA1337.2.3 MA1337.2.4 MA1337.2.5 MA1337.2.6 MA1337.2.7 MA1337.2.8 MA1337.2.9 |
| Publications: | Martinez-Garcia J. F., Moyano E., Alcocer M. J. C., Martin C. Two bZIP proteins from Antirrhinum flowers preferentially bind a hybrid C-box/G-box motif and help to define a new sub-family of bZIP transcription factors.. Plant J. 13:489-505 (1998). [Pubmed] |
| Related annotations: | PaperBLAST |
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