Transcription Factor
| Accessions: | UP00342A (UniPROBE 20160601) |
| Names: | L8084.4, Sfp1, YLR403W, Zinc finger protein SFP1 |
| Organisms: | Saccharomyces cerevisiae |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P32432 |
| Description: | Transcription factor that controls expression of many ribosome biogenesis genes in response to nutrients and stress, regulates G2/M transitions during mitotic cell cycle and DNA-damage response, in... |
| Length: | 101 |
| Pfam Domains: | 9-29 Zinc-finger double domain 16-38 C2H2-type zinc finger 74-88 Zinc-finger double domain 77-96 C2H2-type zinc finger 77-96 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MARRLYVMDHEEQKPFKCPVIGCEKTYKNQNGLKYHRLHGHQNQKLHENPDGTFSVIDPD 60 61 STDSFGDGMGSAKDKPYRCEVCGKRYKNLNGLKYHRGHSTH |
| Interface Residues: | 5, 28, 29, 31, 32, 34, 35, 36, 37, 39, 40, 42, 43, 46, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 71, 88, 89, 90, 91, 93, 94, 95 |
| 3D-footprint Homologues: | 6wmi_A, 7w1m_H, 6ml4_A, 5und_A, 8ssq_A, 1ubd_C, 7ysf_A, 5v3j_F, 1mey_C, 8ssu_A, 6jnm_A, 4x9j_A, 2gli_A, 1f2i_J, 6a57_A, 5kkq_D, 2i13_A, 1g2f_F, 1tf3_A, 1tf6_A, 6blw_A, 2jpa_A, 2wbs_A, 7txc_E, 6u9q_A, 1llm_D, 2kmk_A, 8cuc_F, 7eyi_G, 7y3l_A, 8h9h_G, 7n5w_A, 3uk3_C, 7y3m_I, 4m9v_C, 6e94_A |
| Binding Motifs: | UP00342A_1 wywrdrAAAAwTTTTyywykg |
| Binding Sites: | AAAAATTT AAAAAAAC AAAAAAAT AAAAAATA AAAAAATT AAAATTTT AAATTTTC AGAAAAAA ATTTTTTC CAAAAAAA CGAAAAAA CTTTTTTC GAAAAAAA GGAAAAAA GTAAAAAA GTGAAAAA TAAAAAAA TGAAAAAA AGGAAAAA GAAAAAAC |
| Publications: | *Zhu C, *Byers K, *McCord RP, Shi Z, Berger MF, Newburger D, Saulrieta K, Smith Z, Shah M, Radhakrishnan M, Philippakis AA, Hu Y, De Masi F, Pacek M, Rolfs A , Murthy TVS, LaBaer J, Bulyk ML. High-Resolution DNA Binding Specificity Analysis of Yeast Transcription Factors. Genome Research. Epub January 21, 2009, doi:10.1101/gr.090233.108 (*co-1st authors). [Pubmed] |
| Related annotations: | PaperBLAST |
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