Transcription Factor
| Accessions: | T086785_1.02 (CISBP 1.02) |
| Names: | Gcm1, T086785_1.02; |
| Organisms: | Rattus norvegicus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:GCM |
| Length: | 436 |
| Pfam Domains: | 29-169 GCM motif protein |
| Sequence: (in bold interface residues) | 1 MELDDFDPEDKEILSWDINDMKLPQNVKKTDWFQEWPDSYVKHIYSSDDRSAQRHLSSWA 60 61 MRNTNNHNSRILKKSCLGVVVCSRDCSTEEGRKIYLRPAICDKARQKQQRKSCPNCNGPL 120 121 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPRPETKLEAEARRAMKKVHMASASSS 180 181 LRMKGRPEMKGLPGEIPSQGSLPLTWSFQEGVQLPSGYSTPLIANAPQQNSLNDCLSFPK 240 241 SYDLGGTTELEDPTSTLDPTKLYERYKFSSSKVYSAEDQFQPPVPGVYGDYDEAQTWNKN 300 301 AVLGRSPTDDTYYPPYPLPVASWPCDYLPSQSSLEHSPQQVPLEPPAAQPGHHPLWTNPG 360 361 GEPYEEKVPVDFSSYVPSVTYHSPQQDPFLLAYGSHPQQQYALPGKSNRWDFDEEMACMG 420 421 LDHFNNEMLLNLCSLK |
| Interface Residues: | 63, 64, 65, 67, 100 |
| 3D-footprint Homologues: | 1odh_A |
| Binding Motifs: | M0813_1.02 wbaTrcGGGy |
| Related annotations: | PaperBLAST |
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