Transcription Factor

						

			
Accessions: T007534_1.02 (CISBP 1.02)

			
Names: Arid3a, T007534_1.02;
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:ARID/BRIGHT
Length: 599
Pfam Domains:   242-331 ARID/BRIGHT DNA binding domain
Sequence: 
(in bold interface residues)		   1 MKLQAVMETLIQRQQRARQELEARQAPPPPPPEPTGVRARTTMTDEDREPENARMHRTQM   60
  61 AALAAMRAAAAGLGHPSSPGGSEDGPPISGDEDTAREGTLSSPALHGSVLEGAGHAEGDR  120
 121 HLMDVGSDDDDTKSKWEEQELEELGEEEEEEEEEDDFEEEEEEEEGLGPPESASLGTAGL  180
 181 FTRKAPPAQAFRGDGGPRMLSGPERLGPGPAHPSHMASQMPPPDHGDWTFEEQFKQLYEL  240
 241 DADPKRKEFLDDLFSFMQKRGTPVNRIPIMAKQVLDLFMLYVLVTEKGGLVEVINKKLWR  300
 301 EITKGLNLPTSITSAAFTLRTQYMKYLYPYECERRGLSSPNELQAAIDSNRREGRRQSFG  360
 361 GSLFAYSPSGAHSMLPSPKLPVTPLGLAASTNGSSITPAPKIKKDSAIPITVPGRLPVSL  420
 421 AGHPVVAAQAAAVQAAAAQAAVAAQAAALEQLREKLESTEPPEKKMALVADEQQRLMQRA  480
 481 VQQSFLAMTAQLPMNIRINSQASESRQDSAVSLTSANGSNSISMSVEMNGIVYTGVLFAQ  540
 541 PPPPTAPSAPGKGGVSSIGTNTTTGSRTGASGSTVSGGQVGLPGVSTPTMSSTSNNSLP
Interface Residues: 300, 313, 314, 317, 318, 352
3D-footprint Homologues: 2oeh_A, 1kqq_A
Binding Motifs: M0105_1.02 wttTrATwr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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