Transcription Factor
| Accessions: | T16726 (AthalianaCistrome v4_May2016) |
| Names: | AT3G13810, AtIDD11, T16726; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2 |
| Length: | 514 |
| Pfam Domains: | 99-122 Zinc-finger double-stranded RNA-binding 100-122 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MLLHQHQQPQQDENMSNLTSASGDQASVSSGNITEASGSNYFPHHQQQQEQQQQQIQKLS 60 61 CSWTDSLFQLFDTVTFLEILYPESEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRR 120 121 GHNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCD 180 181 KCSKKYAVQSDCKAHSKTCGTKEYRCDCGTLFSRRDSFITHRAFCEALAEETAREVVIPQ 240 241 NQNNNQPNPLLIHQSASHPHHHHQTQPTINVSSSSSSSHNHNIINSLHFDTNNGNTNNSN 300 301 NSNNHLHTFPMKKEQQSNDHIMNYHHSIIPPWLAPQPHALTSSNPNPSNGGGGGGSLFSL 360 361 ASPAMSATALLQKAAQMGSTKTPPLPPTTAYERSTHNNNLTTTMAAMMTSPSGFISSNNN 420 421 NHVLFQDYNASGFDNHGREEAFDDTFGGFLRTNEVTAAAGSEKSTKSGGGEGLTRDFLGL 480 481 RPLMSHNEILSFAGLGSCINSSASDQLHPKPWQG |
| Interface Residues: | 82, 85, 89, 111, 113, 114, 116, 117, 119, 120, 123, 130, 131, 132, 133, 136, 146, 147, 148, 149, 152, 160, 161, 162, 163, 165, 166, 187, 188, 189, 190, 191, 193, 194, 214, 215, 216, 217, 218, 220, 267, 276, 277, 278, 281, 282, 285 |
| 3D-footprint Homologues: | 7y3l_A, 8cuc_F, 6blw_A, 6e94_A, 5v3j_F, 2gli_A, 5yel_A, 6u9q_A, 5ei9_F, 6wmi_A, 7y3m_I, 2i13_A, 2jpa_A, 5kl3_A, 1g2f_F, 6ml4_A, 4x9j_A, 1mey_C, 2lt7_A, 1ubd_C, 8h9h_G, 7n5w_A, 2kmk_A, 2drp_D, 1llm_D, 7eyi_G, 2wbs_A, 7txc_E, 4umk_D |
| Binding Motifs: | M0316 wwwTTTTGTCGTtTTstk M0325 tttttwttTTTGTCkTtTtyt |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.