Transcription Factor

						

			
Accessions: T22756 (AthalianaCistrome v4_May2016), Q9SBF3 (JASPAR 2024)

			
Names: AT5G10280, MYB92, T22756;, AtMYB92, Myb-related protein 92, MYB92_ARATH, Transcription factor MYB92
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]

2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB
Length: 334
Pfam Domains:     14-61 Myb-like DNA-binding domain
    17-76 Myb-like DNA-binding domain
   67-112 Myb-like DNA-binding domain
   70-119 Myb-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MGRSPISDDSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAGLNRCGKSCRLRWTNY   60
  61 LRPDIKRGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMG  120
 121 FDPMTHRPRTDIFSGLSQLMSLSSNLRGFVDLQQQFPIDQEHTILKLQTEMAKLQLFQYL  180
 181 LQPSSMSNNVNPNDFDTLSLLNSIASFKETSNNTTSNNLDLGFLGSYLQDFHSLPSLKTL  240
 241 NSNMEPSSVFPQNLDDNHFKFSTQRENLPVSPIWLSDPSSTTPAHVNDDLIFNQYGIEDV  300
 301 NSNITSSSGQESGASASAAWPDHLLDDSIFSDIP
Interface Residues: 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111
3D-footprint Homologues: 1vfc_A, 3osg_A, 2kdz_A, 7xur_A, 5eyb_B, 6kks_A, 1mse_C, 3zqc_A
Binding Motifs: M0548 waawwdkyyyACCwAmywh
M0570 gKTAGGTrrr
MA1780.1 yyyACCTAMc
MA1780.2 ACCTAMc
			
Publications: Romero I., Fuertes A., Benito M. J., Malpica J., Leyva A., Paz-Ares J. More than 80R2R3-MYB regulatory genes in the genome of Arabidopsis thaliana. Plant J. 14:273-284 (1998). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.