Transcription Factor
| Accessions: | T116952_1.02 (CISBP 1.02), Q9LZ21 (JASPAR 2024) |
| Names: | AT5G04760, T116952_1.02;, Duplicated homeodomain-like superfamily protein, I-box binding factor-like protein, Putative I-box binding factor, Q9LZ21_ARATH, Uncharacterized protein At5g04760 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT |
| Length: | 215 |
| Pfam Domains: | 100-144 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MASSQWTRSEDKMFEQALVLFPEGSPNRWERIADQLHKSAGEVREHYEVLVHDVFEIDSG 60 61 RVDVPDYMDDSAAAAAGWDSAGQISFGSKHGESERKRGTPWTENEHKLFLIGLKRYGKGD 120 121 WRSISRNVVVTRTPTQVASHAQKYFLRQNSVKKERKRSSIHDITTVDATLAMPGSNMDWT 180 181 GQHGSPVQAPQQQQIMSEFGQQLNPGHFEDFGFRM |
| Interface Residues: | 55, 133, 134, 135, 136, 138, 139 |
| 3D-footprint Homologues: | 3hxo_A, 2kdz_A, 1vfc_A, 6kks_A |
| Binding Motifs: | M1336_1.02 ydGATAAGGy MA2031.1 wtCTTATCyww MA2031.2 CTTATCy |
| Binding Sites: | MA2031.1.3 MA2031.1.1 MA2031.1.10 MA2031.1.11 MA2031.1.12 MA2031.1.13 MA2031.1.14 MA2031.1.15 MA2031.1.16 MA2031.1.17 MA2031.1.18 MA2031.1.19 MA2031.1.2 MA2031.1.20 MA2031.1.4 MA2031.1.5 MA2031.1.6 MA2031.1.7 MA2031.1.8 MA2031.1.9 MA2031.2.1 / MA2031.2.11 / MA2031.2.15 / MA2031.2.16 / MA2031.2.6 / MA2031.2.9 MA2031.2.12 / MA2031.2.4 MA2031.2.18 / MA2031.2.20 / MA2031.2.7 / MA2031.2.8 MA2031.2.10 MA2031.2.13 MA2031.2.14 / MA2031.2.5 MA2031.2.17 MA2031.2.19 / MA2031.2.2 / MA2031.2.3 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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