Transcription Factor
| Accessions: | T135241_1.02 (CISBP 1.02) |
| Names: | Smp_016180, T135241_1.02; |
| Organisms: | Schistosoma mansoni |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Nuclear receptor |
| Length: | 1527 |
| Pfam Domains: | 481-550 Zinc finger, C4 type (two domains) 566-635 Zinc finger, C4 type (two domains) |
| Sequence: (in bold interface residues) | 1 MSDSNNNNNSFNGKYPLISSPTISTSVGLGITTEQHAYSNVINNDLNNCTDKSNSSITSS 60 61 GTTDIGRLLSCITSNGNCYPTYTSTHPTIQTQFSNDVGSEISIHHQQQKQESPGENNSST 120 121 NLCGFRIKCEADDGFSPTGNLSGQSAPISKSSYEMMCNNKPTATNSTLESFSGKSESFEE 180 181 HEIVDDQFVENRKLVETCGSLRAHTQSNKIIGNNDTKESISSQSTRYIPCSSVDQLTLPQ 240 241 TNLSNAFHSDNILNPGCNNRILNNSPVRVVSQGRLDNDNASVNSSSDFTADALTFIDTSS 300 301 TCINTFDTNERMLTGTPDFSCFFPNTLCDPLTKRFTSNGHTPCAGFSVTNQADSKVLIGL 360 361 SPVSKSHRLCYPYDTYEPLKSDFKEHPNINNNNSVDRAQPNPSPNRLKNILNNTFYDRTG 420 421 SNNGSNSVTTPISSCNNDEAVNLITDSGQKSFVNCNEVQLPGFSSPESAFYQYQNKMEGQ 480 481 KCQVCGELAAGFHHGAYVCEACKKFFMRHSMADTKPTNVCPTGGNCIVAKGSRGKCQICR 540 541 YRKCLLVGMKMKDPETQSEIDISNIPCRVCGGRSSGFHFGALTCEGCKGFFRRTEGSSNS 600 601 LVCVGGQNACTITPRSRNACKSCRFRRCLAAGMSKKGSRIGRQPNAVKFHCAIEIKQLQA 660 661 IRGNSSSSTDGLSPSQSSTGCPPYSQYNLSGGGVVGFGSGSSDPLTSSLNHYRHISRSDN 720 721 DNNDDKIGPNYSSAAINPINSSLKQDNLLMSNDCKPTQPPLSLLFFLPPNSMSNHHQLTT 780 781 LNDSKCTQLSSACYSNNHDSAEQDDVDNDDNDGDDDDIDDDDEMQSIRSDYNLESDTSSL 840 841 STNLKLQIYKHMHMRSSPLNDSPQLIRHYSNGSSSVYDALERHALDRAGESITFNDDRND 900 901 GNEGSIDQNSGYKTVKSIPLHQSPISESSSATFCASRLLNNKKLLSFYSQEHQLQSLSSQ 960 961 SNINCSLSSTSSIPTTTSLCSSQRSSSPFSLISSNLSQVQTCTSTIPNSENERVNKVKLP 1020 1021 TSSFSNSTLNTTTCNSTTTTPTLTTINTNTSSNATMANNTTANRHNFISFDDPSFWEDVE 1080 1081 DTLPSINVTSEAVSQFTDGMRTATEFLRLPNAYFKTRFRMTSIPPEHQDNINQVWGHMMN 1140 1141 HFHMHAQQVVQFAKLVPGFNQLGITARSNLVREAMYSVLLLLLSRDYCPETDEYNYFDFP 1200 1201 AKEREVIMRHFPTFKRITEHLRVSGRIMHHLNLSLPELSLSCAAEILRNYCILEEPTAKS 1260 1261 TAELFVLAHHSLLNCMAKHSVPTVASTQQRRTQLFALRKMIRVMDKEHHGILADLRVLRS 1320 1321 DLRFPELYVEMFQLADSASALFSASAQAVTLACSGVLQSSLGSFQNSQLPSTSLNNNQSD 1380 1381 LNTNKLSDSTVNNSDFILSVDRWDAGRLALTVPAAAAAAAAAVVALTEQTSICQNNNNNQ 1440 1441 LLLQPSCQLSSTCAFPQLSNSIVVGSSSLLSTNVSLSSCQKRAKNDVNQSDNITSSIPAF 1500 1501 PTNTNNNIAFITSPSFMFPNQLHHPSS |
| Interface Residues: | 479, 480, 481, 487, 488, 490, 491, 493, 494, 496, 500, 503, 504, 507, 508, 575, 576, 578, 585, 586, 588, 589, 592, 593, 618, 639, 640, 642, 644, 1089, 1090, 1092, 1094, 1095, 1099 |
| 3D-footprint Homologues: | 6d6v_D, 4oln_B, 2nll_B, 6fbq_A, 7wnh_D, 6l6q_B, 3g9m_B, 1lo1_A, 1a6y_A, 2ff0_A, 1dsz_A, 8hbm_B, 2han_A, 1hcq_E, 4umm_E, 3cbb_A, 7xv6_B, 4iqr_B, 2han_B, 1kb2_B, 2a66_A, 8cef_H, 5krb_G, 1lat_A, 7prw_B, 5cbz_E, 4tnt_B, 5e69_A, 4hn5_B, 1r4i_A, 5emc_A, 5cbx_B, 3g6t_A, 2w7n_B |
| Binding Motifs: | M1496_1.02 srTGTCCy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.