Transcription Factor
| Accessions: | T075508_1.02 (CISBP 1.02), Q8LFV3 (JASPAR 2024), T14218 (AthalianaCistrome v4_May2016) |
| Names: | cdf3, T075508_1.02;, AtDOF3.3, CDF3_ARATH, Cyclic dof factor 3, Dof zinc finger protein DOF3.3, H-protein promoter-binding factor 2a, AT3G47500, T14218; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Dof, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2C2-DOF |
| Length: | 448 |
| Pfam Domains: | 106-166 Dof domain, zinc finger |
| Sequence: (in bold interface residues) | 1 MMMETRDPAIKLFGMKIPFPSVFESAVTVEDDEEDDWSGGDDKSPEKVTPELSDKNNNNC 60 61 NDNSFNNSKPETLDKEEATSTDQIESSDTPEDNQQTTPDGKTLKKPTKILPCPRCKSMET 120 121 KFCYYNNYNINQPRHFCKACQRYWTAGGTMRNVPVGAGRRKNKSSSSHYRHITISEALEA 180 181 ARLDPGLQANTRVLSFGLEAQQQHVAAPMTPVMKLQEDQKVSNGARNRFHGLADQRLVAR 240 241 VENGDDCSSGSSVTTSNNHSVDESRAQSGSVVEAQMNNNNNNNMNGYACIPGVPWPYTWN 300 301 PAMPPPGFYPPPGYPMPFYPYWTIPMLPPHQSSSPISQKCSNTNSPTLGKHPRDEGSSKK 360 361 DNETERKQKAGCVLVPKTLRIDDPNEAAKSSIWTTLGIKNEAMCKAGGMFKGFDHKTKMY 420 421 NNDKAENSPVLSANPAALSRSHNFHEQI |
| Interface Residues: | 118, 121, 124, 146, 148, 149, 208, 209, 210, 252 |
| 3D-footprint Homologues: | 6e94_A, 6ki3_B, 3cw7_C |
| Binding Motifs: | M0651_1.02 awAAAGygm MA0974.1 awAAAGygm M0259 tkyaCTTTTtyhytTTTt M0268 aaaaargAAAAAGtraaaa MA0974.2 wwAAAAAGTGww MA0974.3 AAAAAGTG |
| Binding Sites: | MA0974.3.7 MA0974.1.1 MA0974.1.10 MA0974.1.11 / MA0974.1.12 MA0974.1.13 MA0974.1.14 MA0974.1.15 MA0974.1.16 MA0974.1.17 MA0974.1.18 / MA0974.1.19 MA0974.1.2 / MA0974.1.3 MA0974.1.20 MA0974.1.4 MA0974.1.5 MA0974.1.6 MA0974.1.7 MA0974.1.8 MA0974.1.9 MA0974.2.1 MA0974.2.10 / MA0974.2.7 MA0974.2.11 MA0974.2.12 MA0974.2.13 / MA0974.2.8 MA0974.2.14 / MA0974.2.9 MA0974.2.15 MA0974.2.10 / MA0974.2.16 MA0974.2.11 / MA0974.2.17 MA0974.2.12 / MA0974.2.18 MA0974.2.13 / MA0974.2.19 MA0974.2.1 / MA0974.2.2 MA0974.2.14 / MA0974.2.20 MA0974.2.3 MA0974.2.4 MA0974.2.5 MA0974.2.6 MA0974.2.6 / MA0974.2.7 MA0974.2.8 MA0974.2.9 MA0974.2.15 MA0974.2.16 MA0974.2.17 MA0974.2.18 MA0974.2.19 MA0974.2.2 MA0974.2.20 MA0974.3.1 MA0974.3.10 MA0974.3.11 / MA0974.3.12 / MA0974.3.13 MA0974.3.14 / MA0974.3.19 / MA0974.3.3 / MA0974.3.4 / MA0974.3.9 MA0974.3.15 / MA0974.3.17 / MA0974.3.6 MA0974.3.16 / MA0974.3.18 MA0974.3.2 MA0974.3.20 MA0974.3.5 MA0974.3.8 |
| Publications: | Yanagisawa S. Dof1 and Dof2 transcription factors are associated with expression of multiple genes involved in carbon metabolism in maize. Plant J. 21:281-288 (2000). [Pubmed] |
| Related annotations: | PaperBLAST |
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