Transcription Factor
| Accessions: | T099472_1.02 (CISBP 1.02), Q9W064 (JASPAR 2024) |
| Names: | CG42234, T099472_1.02;, Q9W064_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q9W064 |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 741 |
| Pfam Domains: | 437-491 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSTAFLVDSLLHAQQTYTESQLKSSLSEMLLSRRSATGTDAADPADQPTESCGCSKLRGY 60 61 KCDKCREIRAESVESIEEMDEDDGSSSADEIVADIGSVEGEEPHMDLDEELEEELADVDE 120 121 PVSIKLPKVEPKETSMPTVGNTILKDTNSKPILKFSVSAILGDTREGVRVRNEFMQPQHI 180 181 WPYLQQNFMQQHSHQYQQHHQQQQPHSHPQHQPLAVPGHQHSHPHSHHHHHHHPGAGHAH 240 241 FPHPAFLTHQLPPHQHHQQQQHVQQQHPGNSCQPQTASSSSSPGSTISDSDNNHGASTAN 300 301 GNGSGTGNSGQDARPHELANSNPDEDSSASRRLTQDKQQQQQLLGAGGTGGGGGGGHGHG 360 361 HPTPPPPPPPPVIAKPMPSRPTPFLPHTLNHPHLHSLLAHCRNPYMSVGAQVFPLPPGQG 420 421 FPWAHSTRGKPRRGMMRRAVFSDSQRKGLEKRFQQQKYISKPDRKKLAERLGLKDSQVKI 480 481 WFQNRRMKWRNSKERELLASGGSRDQTLPNKNNPNPDLSDAKCDRPLTPLSPSLLSPNGS 540 541 ATPPPPGAVAKDEPPTAAVTPKSPQSVSSRSSPSVGYGLQISSPPPLLTSLKMGDQSASA 600 601 TPTPLPGTTVSSAAASPPGVTASEFQAKINAEMQKQLVAADLKFKLENSIQEAKQRRFEQ 660 661 LQQQLHHSPHFSAMREVELAAAAAAAQLHHHHQQQQQQQQQQHAQQQHAQQQHQGGSEFM 720 721 KLYYDDYDDSNSDSDEEISVT |
| Interface Residues: | 428, 433, 435, 436, 437, 438, 476, 477, 479, 480, 483, 484, 487, 488, 490, 491, 496 |
| 3D-footprint Homologues: | 1puf_A, 1zq3_P, 2lkx_A, 5zfz_A, 3d1n_M, 1nk2_P, 2ld5_A, 1fjl_B, 6es3_K, 4xrs_G, 3cmy_A, 2hdd_A, 1b72_A, 3rkq_B, 2r5y_A, 1ig7_A, 5flv_I, 2hos_A, 5zjt_E, 4cyc_A, 2d5v_B, 1jgg_B, 7psx_B, 3l1p_A, 6a8r_A, 3a01_E, 2h1k_B, 7q3o_C, 1au7_A, 5jlw_D, 3lnq_A, 7xrc_C, 2xsd_C, 1e3o_C, 1le8_A, 1puf_B, 1o4x_A, 8g87_X, 1du0_A, 5hod_A, 4qtr_D, 6m3d_C |
| Binding Motifs: | MA0174.1 TTwATkA M1106_1.02 ATTAATTA |
| Binding Sites: | MA0174.1.10 MA0174.1.1 MA0174.1.11 MA0174.1.12 / MA0174.1.13 MA0174.1.14 MA0174.1.15 MA0174.1.16 MA0174.1.17 MA0174.1.18 MA0174.1.19 MA0174.1.2 MA0174.1.20 MA0174.1.3 MA0174.1.4 MA0174.1.5 MA0174.1.6 MA0174.1.7 MA0174.1.8 MA0174.1.9 |
| Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.