Transcription Factor
| Accessions: | T138676_1.02 (CISBP 1.02) |
| Names: | RFX1, T138676_1.02; |
| Organisms: | Anolis carolinensis |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:RFX |
| Length: | 958 |
| Pfam Domains: | 203-359 RFX1 transcription activation region 413-482 RFX DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MATQAYVTELQAAQQQSQQQQQSQQQPAATAATAAPVVVAAAAAQQQYVAELQGAQQQQP 60 61 TPKQYVPEIPPPQTQAPPTGQQTSTPAPQQYIVVTVSEGSMRPSDTVSESSPGSTATQSG 120 121 VPTQVVQQVQATQQRLLVQASVQTKPGTVSPLQLTSVQVPQQELCNQRLVVQSTSQASKG 180 181 GPVALAVHGVQQVHSSPEHSPVQNSSSAAKPGQVQQLQLHGVQQVPVAQERSVVQTTPSA 240 241 PKAGSVQQLAVQGLQQVHVTQEVQQLQQVPVQHVYPNQVQYVEGGDASYTASTIRSNTYS 300 301 YTETPLYTQNAGANYYESQGTSTQVSSPATSQTVASSGSVPMYVSGGQIIANPSGGSSAG 360 361 GGGGGSGGGGGGGGGAGNGGSGSGSSSSTGTYVIQGGYMLGSSSQSYSHTTRASPATVQW 420 421 LLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFGKLIRSVFMGLRTRRLGTRGN 480 481 SKYHYYGLRIKANSPLLRLMEDQQHLAMRQQPFSQKQRLKSIQKMEGMTNGVAVGQQQAS 540 541 GLSDISAQVQQYQQFLDASRSLPDFAEIDLQGKTLPEGIVPEDVKAFQLLYREHCEAIVD 600 601 VMVNLQFTLVETLWKTFWRYNMNQPSEATSIVIHDEAEKRLPKSCLVTLSKYEPVLKWTK 660 661 DCDNLLYQGLVEVLIPEVLRPIPSALTQAIRNFAKSLESWLTNAMMNIPEEMVRVKVAAA 720 721 SAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLSDLNRVDFANVQEQASWVCRCEDRVV 780 781 QRLEQDFKMTLQQQNSLEQWAVWLDGVVSQVLKPYHGSPSFPKAAKLFLLKWSFYSSMVI 840 841 RDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQAKGETPIAVMGEFANLTSSLNPLDP 900 901 DKDEEEEEEEESDEEMPQELSLSSNESSSLTADPMEPPPSKLARTDARGIFVQALPSS |
| Interface Residues: | 457, 461, 474, 478, 483 |
| 3D-footprint Homologues: | 1dp7_P |
| Binding Motifs: | M1525_1.02 cChTrGyaAC |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.