Transcription Factor
| Accessions: | D9HNT1 (JASPAR 2024) |
| Names: | D9HNT1_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | D9HNT1 |
| Length: | 935 |
| Pfam Domains: | 143-244 B3 DNA binding domain 269-351 Auxin response factor 826-921 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MTSSYEKATSGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVYY 60 61 FPQGHSEQVAATTKKIPNSRIPNYPSLPSQLLCQVHNITLHADKETDEIYAQMTLQPVHS 120 121 ETDVFPIPTLGAYTKSKHPSEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPN 180 181 QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLVG 240 241 VRRATRQQPALSSSVLSTDSMHIGVLAAAAHAASSGGSFTVYYNPRTSPSPFVIPLARYN 300 301 MATYLQPSVGMRFAMMFETEESSKRRCTGTIVGISDYEPMRWPNSKWRNLQVEWDEHGYG 360 361 ERPERVSLWDIETPENMVFSSPLNSKRQCLPSYGVSGLHVSSISKPQGSPFGNLQHMPGI 420 421 SSDIALLLLNQSAQNLGSSIACQQSSFSSIIQNAKQSYFPPTTLGASTGWNESQQQLNAL 480 481 GIQKGDQVSCDVQPGIDSITAPEMNVKPRVPRSTDSYSSQSISDPNSKSDPKTKTRRSKK 540 541 SSSHKTISDKSEISSVPSQICDKQRHGSEPTSADFEAEQATCGNNEDSSGALTRGDFAGE 600 601 LQVQQVEQDGLLPPPKLESSKSPDGGKSVSSFPNQGCFSQFFEGLDWMIPPSCYQDSNGI 660 661 HSVTTSDSIFNPSEGIPPSTMNADGMDAFQTSCLSECFPNSIQEFISSPDINTLTFMSPE 720 721 MQHLDAQHDGSNLQSTSNSYVQMSFSEESQSASLSGLHMEAVHINSSCLQPLATGSFDAG 780 781 TFSKLSNIKECQALPLQEIHNSSMGTPSCSMDAAAVEYCMDRSVKPLKPPVRTYTKVQKL 840 841 GSVGRSIDVTRFRDYHELRSAIACMFGLQGKLEHPGSSDWKLVYVDYENDVLLVGDDPWE 900 901 EFINCVRCIRILAPSEVQQMSENGVHVLNDCMQMA |
| Interface Residues: | 148, 150, 155, 156, 157, 158, 159, 160, 200, 201, 202, 203, 205, 206 |
| 3D-footprint Homologues: | 6j9b_A, 6ycq_A, 3hqf_A, 7et6_A, 6j9c_D, 8oj2_A |
| Binding Motifs: | MA1697.1 vvACGACAAGrm MA1697.2 ACGACAAG |
| Binding Sites: | MA1697.1.1 MA1697.1.10 / MA1697.1.4 MA1697.1.11 MA1697.1.12 MA1697.1.13 / MA1697.1.5 MA1697.1.14 MA1697.1.15 / MA1697.1.6 MA1697.1.16 MA1697.1.17 MA1697.1.18 MA1697.1.19 / MA1697.1.7 MA1697.1.2 MA1697.1.20 MA1697.1.1 / MA1697.1.3 MA1697.1.2 / MA1697.1.4 MA1697.1.3 / MA1697.1.5 MA1697.1.6 MA1697.1.7 MA1697.1.8 MA1697.1.9 MA1697.1.10 MA1697.1.11 MA1697.1.12 MA1697.1.13 MA1697.1.14 MA1697.1.15 MA1697.1.16 MA1697.1.17 MA1697.1.18 MA1697.1.19 MA1697.1.20 MA1697.1.8 MA1697.1.9 MA1697.2.2 MA1697.2.1 / MA1697.2.19 / MA1697.2.5 / MA1697.2.8 MA1697.2.10 / MA1697.2.12 / MA1697.2.3 MA1697.2.11 / MA1697.2.6 / MA1697.2.9 MA1697.2.13 / MA1697.2.15 / MA1697.2.18 / MA1697.2.20 MA1697.2.14 MA1697.2.16 MA1697.2.17 MA1697.2.4 MA1697.2.7 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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