Transcription Factor

						

			
Accessions: T27093 (AthalianaCistrome v4_May2016)

			
Names: AT5G08130, BIM1, T27093;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bHLH
Length: 532
Pfam Domains:   282-331 Helix-loop-helix DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MELPQPRPFKTQEFRTGRKPTHDFLSLCSHSTVHPDPKPTPPPSSQGSHLKTHDFLQPLE   60
  61 CVGAKEDVSRINSTTTASEKPPPPAPPPPLQHVLPGGIGTYTISPIPYFHHHHQRIPKPE  120
 121 LSPPMMFNANERNVLDENSNSNCSSYAAASSGFTLWDESASGKKGQTRKENSVGERVNMR  180
 181 ADVAATVGQWPVAERRSQSLTNNHMSGFSSLSSSQGSVLKSQSFMDMIRSAKGSSQEDDL  240
 241 DDEEDFIMKKESSSTSQSHRVDLRVKADVRGSPNDQKLNTPRSKHSATEQRRRSKINDRF  300
 301 QMLRQLIPNSDQKRDKASFLLEVIEYIQFLQEKADKYVTSYQGWNHEPAKLLNWSNNNQQ  360
 361 LVPEGVAFAPKLEEEKNNIPVSVLATAQGVVIDHPTTATTSPFPLSIQSNSFFSPVIAGN  420
 421 PVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISSVYSQGLVKTLREALENSGV  480
 481 DLTKASISVEIELAKQSSSSSFKDHEVREPVSRTRNDNVKQTRKPKRLKTGQ
Interface Residues: 282, 284, 285, 286, 288, 289, 292, 293, 314, 316
3D-footprint Homologues: 7z5k_B, 1an4_A, 7ssa_L, 5eyo_A, 8osl_O, 7d8t_A, 5gnj_I, 7f2f_B, 4h10_A, 8hov_A, 5i50_B, 7rcu_E, 4h10_B, 8ia3_B, 6g1l_A, 1am9_A, 8osl_P
Binding Motifs: M0165 wrtCACGTGAchhyyaygtgyy
M0169 CACGTGAcwyycmc
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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