Transcription Factor

						

			
Accessions: T012033_1.02 (CISBP 1.02)

			
Names: PK18474.1, T012033_1.02;
Organisms: Cannabis sativa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:bHLH
Length: 701
Pfam Domains:    87-268 bHLH-MYC and R2R3-MYB transcription factors N-terminal
  521-566 Helix-loop-helix DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MTDYRIQSTMNLWTDDNASMMEAFMSSSDLSSLWAAATPTTTTTTSTQPLQPLHSAASTS   60
  61 AAPQQQQPPPLPPPPPPQVAPFNQETLQQRLQALIEGARESWTYAIFWQSSYDYSGASVL  120
 121 GWGDGYYKGEEDKGRGKAKASYSSPAEQEHRKKVLRELNSLISGSAPAPDEAVDEEVTDT  180
 181 EWFFLVSMTQSFVNGGGLPGQAFFNSNPVWVTGRDNLTSSTCERARQGQIFGLQTIVCIP  240
 241 SENGVVELGSTEVIFQSSDLMNKVRFLFNFSNLEVGSCLLSGGGAPDQGENDPSFWLNDP  300
 301 TSTTVEVKDSVTTGAAPSASVPSSTNQQQTSKSTVQFENPSSSSLTDNPSTIQRQQQAQT  360
 361 TQSFFTKELNFSDYGFDGNSVKNNGNSHSLKPESGEILNFGESKRSSYSANGNLFSGQSQ  420
 421 FAAEENNNNINNTTTNGTNKKKKSPTSRGSNNEEGMLSFTSGVVLPSSGVIKSSGGTGDS  480
 481 DHSDLEASVVREADSSRVVEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYAL  540
 541 RAVVPNVSKMDKASLLGDAISYINELKSKLQTTETEKEDLQKQMDCMKRELASKDSRSSS  600
 601 ADQDLSMVSNLGGGSKLIDLDIDVKIIGWDAMIRIQCSKKNHPAARVMAALMELDLDVHH  660
 661 ASVSVVNDLMIQQATVKMGSRFYTQEQLRVALTSKVGGDTR
Interface Residues: 522, 523, 525, 526, 529, 530, 534, 550, 552
3D-footprint Homologues: 5i50_B, 7d8t_A, 4zpk_A, 8ia3_B, 5nj8_D, 7ssa_L, 5eyo_A, 5v0l_A, 7xi3_A, 5gnj_I, 6g1l_A, 4h10_A, 7xq5_A, 8osl_P, 1an4_A, 8osb_B
Binding Motifs: M0149_1.02 caCGTGc
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.