Transcription Factor
| Accessions: | T10980 (AthalianaCistrome v4_May2016) |
| Names: | AT2G01940, SGR5, T10980; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:C2H2 |
| Length: | 446 |
| Sequence: (in bold interface residues) | 1 MRTDQVMLSNKNTNTCCVVSSSSSDPFLSSSENGVTTTNTSTQKRKRRPAGTPDPDAEVV 60 61 SLSPRTLLESDRYICEICNQGFQRDQNLQMHRRRHKVPWKLLKRDNNIEVKKRVYVCPEP 120 121 TCLHHNPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSC 180 181 DCGFFSSFRVESFIEHQDNCSARRVHREPPRPPQTAVTVPACSSRTASTVSTPSSETNYG 240 241 GTVAVTTPQPLEGRPIHQRISSSILTNSSNNLNLELQLLPLSSNQNPNQENQQQKVKEPS 300 301 HHHNHNHDTTNLNLSIAPSSSYQHYNNFDRIKEIMASEQIMKIAMKEKAYAEEAKREAKR 360 361 QREIAENEFANAKKIRQKAQAELERAKFLKEQSMKKISSTIMQVTCQTCKGQFQAVAVPA 420 421 ATADETSLVVSYMSSANTDGELENGF |
| Interface Residues: | 55, 58, 59, 62, 83, 84, 85, 86, 87, 90, 94, 104, 106, 107, 110, 131, 133, 134, 135, 136, 137, 138, 139, 140, 161, 162, 163, 164, 165, 166, 167, 168, 169 |
| 3D-footprint Homologues: | 7y3l_A, 8cuc_F, 2i13_A, 6jnm_A, 2kmk_A, 5v3j_F, 1mey_C, 7y3m_I, 2gli_A, 6u9q_A, 5ei9_F, 6e94_A, 6a57_A, 6ml4_A, 4m9v_C, 2wbs_A, 7eyi_G, 8h9h_G |
| Binding Motifs: | M0318 araAwAAGACAAAAw M0303 tTTTGTCTywttytt |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.