Transcription Factor
| Accessions: | 6uep_B (3D-footprint 20231221) |
| Names: | AtTBP1, TATA sequence-binding protein 1, TATA-binding factor 1, TATA-box factor 1, TATA-box-binding protein 1, TBP-1, TBP1_ARATH, Transcription initiation factor TFIID TBP-1 subunit |
| Organisms: | Arabidopsis thaliana |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Uniprot: | P28147 |
| Length: | 191 |
| Pfam Domains: | 14-96 Transcription factor TFIID (or TATA-binding protein, TBP) 101-186 Transcription factor TFIID (or TATA-binding protein, TBP) |
| Sequence: (in bold interface residues) | 1 NPVDLSKHPSGIVPTLQNIVSTVNLDCKLDLKAIALQARNAEYNPKRFAAVIMRIREPKT 60 61 TALIFASGKMVCTGAKSEDFSKMAARKYARIVQKLGFPAKFKDFKIQNIVGSCDVKFPIR 120 121 LEGLAYSHAAFSSYEPELFPGLIYRMKVPKIVLLIFVSGKIVITGAKMRDETYKAFENIY 180 181 PVLSEFRKIQQ |
| Interface Residues: | 18, 20, 48, 49, 63, 65, 71, 73, 107, 108, 110, 139, 140, 154, 156, 162, 164 |
| 3D-footprint Homologues: | 4wzs_D, 6cnb_R, 1cdw_A, 5iy6_P, 7z7n_D, 1qna_B, 5n9g_G, 1ytb_A, 5oqj_O, 1ais_A |
| Binding Motifs: | 6uep_B cCtTTATA |
| Binding Sites: | 6uep_E 6uep_F |
| Publications: | Afek A, Shi H, Rangadurai A, Sahay H, Senitzki A, Xhani S, Fang M, Salinas R, Mielko Z, Pufall MA, Poon GMK, Haran TE, Schumacher MA, Al-Hashimi HM, Gordân R. DNA mismatches reveal conformational penalties in protein-DNA recognition. Nature 587:291-296 (2020). [Pubmed] |
| Related annotations: | PaperBLAST |
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