Transcription Factor

						

			
Accessions: T151486_1.02 (CISBP 1.02)

			
Names: LjT20A21.20.nc, T151486_1.02;
Organisms: Lotus japonicus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:TCP
Length: 415
Pfam Domains:    41-174 TCP family transcription factor
Sequence: 
(in bold interface residues)		   1 MEEDEIQEQVSKFPRIENGTTFQSSSWHNNSSRIVRVSRASGGKDRHSKVMTSKGLRDRR   60
  61 VRLSVSTAIQFYDLQDRLGVDQPSKAVDWLIKAAEDAISELPSLNNLFPETPQQQSDHEN  120
 121 QNLNQNLNSLSKSACSSNSETSKGSGGLSLSRCENRVKARERARERAAKEKENESSIAHN  180
 181 VNNNHHHMSQTASFTELLTGGIGSTVTVPTTTASPTGSVHQTHGGHHQWSSTVTPMDYFS  240
 241 SGLLMGHSSSRTHQSSSSSSSSPGFSGQIQLGHSLPVSPFSGENHSDQMQRFSFMPEHLM  300
 301 VTSSSCSTQPSGISDYNLNFTISPGLAAGYNRGTLQSNSPSLLPHHHHLQRFSSSQVDGS  360
 361 SSNNNLPFFMGGAAAAPSTMENHHHLQFSPLFDGRLQLCYGDGSRNSDQKGKGKN
Interface Residues: 45, 46, 47, 60, 62
3D-footprint Homologues: 7vp2_B, 7vp3_D
Binding Motifs: M1663_1.02 GGGACCAy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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