Transcription Factor

Accessions: T150128_1.02 (CISBP 1.02)
Names: T150128_1.02;, tbx-43
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:T-box
Length: 305
Pfam Domains: 5-183 T-box
Sequence:
(in bold interface residues)
1 MQCHVALMEKSLWREFDSQCNEMIITKIGRNLFPILEFAFKGLCEHLNYKIGVTMEPISY 60
61 QKLKFTAGRWESLDIQEEMVQPNEVFLMKSGRELLQRGLKLEKLKLTNSKDALQKSDQMI 120
121 RVQSMRQYMPVLNIYEISPVGAHNQIGKFQFPETKFIAVTAYQSELVKQLKVQKNKFAQG 180
181 FRESIKSNATSSTKRPLSTTSSNSSPDSTLSMSSENLGHTTKKGRGGGQEIGVLLTSQNY 240
241 QSFDQFSNFSQAFPPNFQPSYAQHYPIPDYQPNYAQFGAENFWSLNPAPYDFTAAGNFQN 300
301 FQWNG
Interface Residues: 30, 160, 161, 177, 180, 181
3D-footprint Homologues: 1h6f_B, 5flv_I, 1xbr_B, 6f59_B, 2x6v_A, 4a04_B
Binding Motifs: M1635_1.02 raGGTGTsAa
Related annotations: PaperBLAST

Disclaimer and license

These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.