Transcription Factor
| Accessions: | T154036_1.02 (CISBP 1.02), Q9FYA2 (JASPAR 2024), T23183 (AthalianaCistrome v4_May2016) |
| Names: | T154036_1.02;, WRKY75, Probable WRKY transcription factor 75, WRK75_ARATH, WRKY DNA-binding protein 75, AT5G13080, T23183; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:WRKY, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
| Length: | 145 |
| Pfam Domains: | 66-124 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MEGYDNGSLYAPFLSLKSHSKPELHQGEEESSKVRSEGCSKSVESSKKKGKKQRYAFQTR 60 61 SQVDILDDGYRWRKYGQKAVKNNKFPRSYYRCTYGGCNVKKQVQRLTVDQEVVVTTYEGV 120 121 HSHPIEKSTENFEHILTQMQIYSSF |
| Interface Residues: | 73, 74, 75, 77, 78, 89 |
| 3D-footprint Homologues: | 6j4g_B, 6ir8_A, 6j4e_B, 6j4f_F, 7z0u_A |
| Binding Motifs: | M1696_1.02 hrGTCAAm MA1093.1 hrGTCAAm M0794 aAAAGTCAACgah M0804 dwcGTTGACTTTt MA1093.2 rGTCAAm |
| Binding Sites: | MA1093.1.1 MA1093.1.10 MA1093.1.11 MA1093.1.12 MA1093.1.13 MA1093.1.14 MA1093.1.15 MA1093.1.16 MA1093.1.17 MA1093.1.18 MA1093.1.19 MA1093.1.2 MA1093.1.20 MA1093.1.3 MA1093.1.4 MA1093.1.5 MA1093.1.6 MA1093.1.7 MA1093.1.8 MA1093.1.9 MA1093.2.12 MA1093.2.9 MA1093.2.1 MA1093.2.10 MA1093.2.11 MA1093.2.13 MA1093.2.14 MA1093.2.15 MA1093.2.16 MA1093.2.17 MA1093.2.18 MA1093.2.19 MA1093.2.2 MA1093.2.20 MA1093.2.3 MA1093.2.4 MA1093.2.5 MA1093.2.6 MA1093.2.7 MA1093.2.8 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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