Transcription Factor
| Accessions: | D9HNV6 (JASPAR 2024) |
| Names: | D9HNV6_MAIZE |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | D9HNV6 |
| Length: | 945 |
| Pfam Domains: | 143-244 B3 DNA binding domain 269-351 Auxin response factor 835-931 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MASSQEKATSGVLRNAAALLDEMQLMGETQGAKKVINSELWHACAGPLVCLPQRGSLVYY 60 61 FPQGHSEQVAATTKKIPNSRIPNYPSLPPQLLCQVHNITLHADKETDEIYCQMTLQPLHS 120 121 ETDVFPIPTLGAYTKSKHPTEYFCKNLTASDTSTHGGFSVPRRAAEKLFPQLDYSMQPPN 180 181 QELIVRDLHDNMWTFRHIYRGQPKRHLLTTGWSLFVGAKRLKAGDSVLFIRDEKSQLLVG 240 241 VRRATRQQPALSSSVLSTDSMHIGVLAAAAHAASSGGSFTIYYNPRTSPSPFVIPLARYN 300 301 KATYLQPSVGMRFAMMFETEESSKRRCTGAIVGISDYDPMRWPNSKWRNLQVEWDEHGYG 360 361 ERPERVSIWDIETPENMVFSSPLNSKRQCLPSYGVPGLQIGSVNMSSIPRAQGNPIGNLQ 420 421 HMPGMGSELALLLLNQSGQNIGSPIACQQSSFSSIIQNAKHSYFPPKTFGASTASMKQES 480 481 MPSTEAQPQLNALGIQRSDRVSCEVQTASDSNPAQEMSVKPRAPRSTDSHSSQSISDQNS 540 541 KGEPRTKTRRSKKSSYQKTISDKSELCSVPSQICDDKKHGSEPRLADCEAEQATCGNNEE 600 601 SSGALTHGDFAGELQVQQQVEQHELLAPPKIESSKSPDGGKSVSSFPNQGCIPQFFEGLD 660 661 WMIPPSYYQDSNGIQSVTASDNIFNPSEGIPSTMNADALDAFQTSCLSECFPSSIQEFIG 720 721 SPDINTLAFMSPEMQQLDAGSNLPSTSNSYVQMSFSEESHSASLSGLHMEAIHINSSSCS 780 781 QPLATGSFDAGAFPKLSNIRECQPLPLQEIHTSSMGTPSCSMDAAAEYGTDRSAKQMKPP 840 841 VRTYTKVQKLGSVGRCIDVTRFRDYHELRSAIACMFGLQGKLEHPGSSDWKLVYVDYEND 900 901 VLLVGDDPWEEFINCVRCIRILSPSEVQQMSENGVHVLNDCIQIA |
| Interface Residues: | 148, 150, 155, 156, 157, 158, 159, 160, 200, 201, 202, 203, 205, 206 |
| 3D-footprint Homologues: | 6j9b_A, 3hqf_A, 6ycq_A, 7et6_A, 6j9c_D, 6sdg_B |
| Binding Motifs: | MA1692.1 cmtwGCCGACAAvrw MA1692.2 GCCGACAA |
| Binding Sites: | MA1692.2.12 / MA1692.2.15 / MA1692.2.18 / MA1692.2.2 MA1692.1.1 MA1692.1.10 MA1692.1.11 MA1692.1.12 / MA1692.1.3 MA1692.1.13 / MA1692.1.4 MA1692.1.14 MA1692.1.15 / MA1692.1.5 MA1692.1.16 / MA1692.1.6 MA1692.1.17 MA1692.1.18 / MA1692.1.7 MA1692.1.19 / MA1692.1.8 MA1692.1.1 / MA1692.1.2 MA1692.1.20 / MA1692.1.9 MA1692.1.3 MA1692.1.2 / MA1692.1.4 MA1692.1.5 MA1692.1.6 MA1692.1.7 MA1692.1.8 MA1692.1.9 MA1692.1.10 MA1692.1.11 MA1692.1.12 MA1692.1.13 MA1692.1.14 MA1692.1.15 MA1692.1.16 MA1692.1.17 MA1692.1.18 MA1692.1.19 MA1692.1.20 MA1692.2.14 MA1692.2.5 MA1692.2.1 / MA1692.2.17 MA1692.2.10 MA1692.2.11 / MA1692.2.19 / MA1692.2.8 MA1692.2.13 MA1692.2.16 MA1692.2.20 MA1692.2.3 / MA1692.2.7 MA1692.2.4 / MA1692.2.6 MA1692.2.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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