Transcription Factor
| Accessions: | T10016 (AthalianaCistrome v4_May2016), Q9SK55 (JASPAR 2024) |
| Names: | ANAC042, AT2G43000, T10016;, NAC domain-containing protein 42, NAC42_ARATH, Transcription factor JUNGBRUNNEN 1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:NAC |
| Length: | 275 |
| Pfam Domains: | 20-143 No apical meristem (NAM) protein |
| Sequence: (in bold interface residues) | 1 MSGEGNLGKDHEEENEAPLPGFRFHPTDEELLGYYLRRKVENKTIKLELIKQIDIYKYDP 60 61 WDLPRVSSVGEKEWYFFCMRGRKYRNSVRPNRVTGSGFWKATGIDKPVYSNLDCVGLKKS 120 121 LVYYLGSAGKGTKTDWMMHEFRLPSTTKTDSPAQQAEVWTLCRIFKRVTSQRNPTILPPN 180 181 RKPVITLTDTCSKTSSLDSDHTSHRTVDSMSHEPPLPQPQNPYWNQHIVGFNQPTYTGND 240 241 NNLLMSFWNGNGGDFIGDSASWDELRSVIDGNTKP |
| Interface Residues: | 84, 89, 91, 100, 102, 104, 124, 128, 129, 130, 133 |
| 3D-footprint Homologues: | 7xp3_B, 3swp_A |
| Binding Motifs: | M0669 ygCCGTrwhhtyymCGyyry MA2017.1 dycACGGCGagtdw MA2017.2 ACGGCGa |
| Binding Sites: | MA2017.1.1 MA2017.1.10 MA2017.1.11 MA2017.1.12 MA2017.1.13 MA2017.1.14 MA2017.1.15 MA2017.1.16 MA2017.1.17 MA2017.1.18 MA2017.1.19 MA2017.1.2 MA2017.1.20 MA2017.1.3 MA2017.1.4 MA2017.1.5 MA2017.1.6 MA2017.1.7 MA2017.1.8 MA2017.1.9 MA2017.2.1 / MA2017.2.13 / MA2017.2.19 / MA2017.2.20 / MA2017.2.3 / MA2017.2.6 MA2017.2.10 MA2017.2.11 / MA2017.2.4 MA2017.2.12 MA2017.2.14 / MA2017.2.2 MA2017.2.15 / MA2017.2.18 MA2017.2.16 / MA2017.2.5 / MA2017.2.7 / MA2017.2.8 MA2017.2.17 MA2017.2.9 |
| Publications: | Wu A, Allu AD, Garapati P, Siddiqui H, Dortay H, Zanor MI, Asensi-Fabado MA, Munné-Bosch S, Antonio C, Tohge T, Fernie AR, Kaufmann K, Xue GP, Mueller-Roeber B, Balazadeh S. JUNGBRUNNEN1, a reactive oxygen species-responsive NAC transcription factor, regulates longevity in Arabidopsis. Plant Cell 24:482-506 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
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