Transcription Factor
| Accessions: | T116962_1.02 (CISBP 1.02), Q9FNN6 (JASPAR 2024), T26197 (AthalianaCistrome v4_May2016) |
| Names: | AT5G08520, T116962_1.02;, Myb-related protein SRM1, Protein SALT-RELATED MYB 1, SRM1_ARATH, Transcription factor SRM1, T26197; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:Myb/SANT, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related |
| Length: | 298 |
| Pfam Domains: | 11-55 Myb-like DNA-binding domain 119-163 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MTVEEVSDGSVWSREDDIAFERALANNTDESEERWEKIAADVPGKSVEQIKEHYELLVED 60 61 VTRIESGCVPLPAYGSPEGSNGHAGDEGASSKKGGNSHAGESNQAGKSKSDQERRKGIAW 120 121 TEDEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIH 180 181 DITSVGNADVSTPQGPITGQNNSNNNNNNNNNNSSPAVAGGGNKSAKQAVSQAPPGPPMY 240 241 GTPAIGQPAVGTPVNLPAPPHMAYGVHAAPVPGSVVPGAAMNIGQMPYTMPRTPTAHR |
| Interface Residues: | 47, 51, 52, 115, 152, 153, 154, 155, 158, 168, 169, 172, 173, 176 |
| 3D-footprint Homologues: | 7xur_A, 1w0t_A, 2kdz_A, 1vfc_A |
| Binding Motifs: | M1339_1.02 yrGATargg M0607 / MA1399.1 dwwdwrGATAAGr M0602 yCTTATCywhw MA1681.1 wwwaGATAAGrtww MA1681.2 aGATAAGrt |
| Binding Sites: | MA1399.1.1 MA1399.1.10 MA1399.1.11 MA1399.1.12 MA1399.1.13 MA1399.1.14 MA1399.1.15 MA1399.1.16 MA1399.1.17 MA1399.1.18 MA1399.1.19 MA1399.1.2 MA1399.1.20 MA1399.1.3 MA1399.1.4 MA1399.1.5 MA1399.1.6 MA1399.1.7 MA1399.1.8 MA1399.1.9 MA1681.1.1 MA1681.1.10 MA1681.1.11 / MA1681.1.9 MA1681.1.10 / MA1681.1.12 MA1681.1.13 MA1681.1.11 / MA1681.1.14 MA1681.1.15 MA1681.1.12 / MA1681.1.16 MA1681.1.17 MA1681.1.13 / MA1681.1.18 MA1681.1.14 / MA1681.1.19 MA1681.1.1 / MA1681.1.2 MA1681.1.15 / MA1681.1.20 MA1681.1.2 / MA1681.1.3 MA1681.1.3 / MA1681.1.4 MA1681.1.4 / MA1681.1.5 MA1681.1.5 / MA1681.1.6 MA1681.1.6 / MA1681.1.7 MA1681.1.7 / MA1681.1.8 MA1681.1.8 / MA1681.1.9 MA1681.1.16 MA1681.1.17 MA1681.1.18 MA1681.1.19 MA1681.1.20 MA1681.2.10 / MA1681.2.6 MA1681.2.1 MA1681.2.11 / MA1681.2.7 MA1681.2.12 MA1681.2.13 MA1681.2.14 MA1681.2.15 MA1681.2.16 MA1681.2.17 MA1681.2.18 / MA1681.2.19 MA1681.2.2 / MA1681.2.5 MA1681.2.20 MA1681.2.3 MA1681.2.4 MA1681.2.8 MA1681.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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