Transcription Factor
| Accessions: | T074454_1.02 (CISBP 1.02) |
| Names: | KDM2B, T074454_1.02; |
| Organisms: | Danio rerio |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:CxxC |
| Length: | 805 |
| Pfam Domains: | 62-106 CXXC zinc finger domain 583-635 F-box domain 595-637 F-box-like |
| Sequence: (in bold interface residues) | 1 MAMSLSADDEDYDSDTAEQQQLPNKPKPKMATSTATTPSATTSSSTATAVKLPSNRTSSG 60 61 ARRRRTRCRKCEACVRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVC 120 121 GEAGKEDTLDDEDEKFNAMLMECSICNEIVHPNCLKVKDAAGVVNDELPNCWECPKCNYA 180 181 GKTGKQKRGPGFKYASNLPGSLLREQKAGRDGREEGDQTSTGPASIKRKTEREETPRLKT 240 241 EDLPSRLPPLLSPSGLPRPRSEVPNFLRKKRKLFDDDEEEEEASAKKKQKKPWRPEEPLI 300 301 PKLSHMKAEEEEDNSDEEEERQEKREQPRRSIKKDYSIVRKEEEREEDRREDRDPPFRSL 360 361 KEFHNMSKEEDHDEEKEDDDEEEEEESNGKRGRDSSPALKNLSLSLESDASRCSSPRAGP 420 421 SSEGSETQEKAPRARARRHRRKPPNRQLSAELSKQLNMEIRRTEHSLANENQQPLMSEPE 480 481 DSENEEPKRGLRNGTAGNAGGGGGGVERGAGGEAGGERPHLRAREMNGTSWELRHFYPPQ 540 541 ITPLGLNRSSPTVRPLPARSPPKCVQMERHVIRPPPICPPPDRLPLADGRNHIAPREAWL 600 601 AIFSHLSHRELCVCMRVCRTWNRWCCDKRLWTRIDLKRCKSITPLMLSGIIRRQPITLDL 660 661 SWTNISKKQLSWLINRLPGLRVLLLSGCSWVAVSALCTSSCPLLRTLDLQWVEGLKDPQM 720 721 RDLLSPPTDNRPGQMDTRSKLRNVTDLRLAGLDITDSSLRLIIKNMPLLSRLDLSYCNHI 780 781 NDQSVNLLTAAGTTTRDSLTDVNLS |
| Interface Residues: | 95, 98, 99 |
| 3D-footprint Homologues: | 3qmd_A |
| Binding Motifs: | M0604_1.02 gCGtaak |
| Related annotations: | PaperBLAST |
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