Transcription Factor
| Accessions: | T061409_1.02 (CISBP 1.02) |
| Names: | egl-43, T061409_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 322 |
| Pfam Domains: | 223-245 C2H2-type zinc finger 223-245 Zinc finger, C2H2 type 237-261 Zinc-finger double domain 251-274 C2H2-type zinc finger 251-274 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MPSQAALTKHRPVCEMTALYKPLMAQLAGLSGAGGLGSVPYWPHILQMATQAPHFPLAFL 60 61 AANPEAYKLMQQTTCASPDAECSSGHASESSPTTTEPVDLTATPKPPSTSEMETTSKSDD 120 121 GEDRDSIGDSGNDDDDDSEAGVLDESSTTTSTKKRPTSHTISDILAAPQLGAQALNSTFL 180 181 GMLQRSLNYNPAVPSPHSFLRAMSGAKASSSPSSSSGSGKDRYTCKFCQKVFPRSANLTR 240 241 HLRTHTGEQPYKCQYCERSFSISSNLQRHVRNIHNKPNTSLTPHNHHRQRSLHNSTSTST 300 301 TTTTVHHPLLHLPGTSVPVPKV |
| Interface Residues: | 214, 215, 218, 233, 234, 235, 236, 237, 239, 240, 241, 261, 262, 263, 264, 265, 266, 267, 268, 269, 272, 287, 289, 290 |
| 3D-footprint Homologues: | 2jpa_A, 3uk3_C, 2kmk_A, 8cuc_F, 7y3l_A, 1g2f_F, 5kl3_A, 1ubd_C, 8gn3_A, 7txc_E, 6a57_A, 5k5i_A, 1llm_D, 7ysf_A, 6ml4_A, 5v3j_F, 2drp_D, 8h9h_G, 7w1m_H, 6blw_A, 5k5l_F, 2lt7_A, 6u9q_A, 5yel_A, 4x9j_A, 2gli_A, 8ssq_A, 1f2i_J, 5kkq_D, 2wbs_A, 7n5w_A, 5ei9_F, 6jnm_A, 4m9v_C, 1tf3_A, 6e94_A, 1tf6_A, 7y3m_I, 5yj3_D, 8gh6_A |
| Binding Motifs: | M0489_1.02 rkGATGmghh |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.