Transcription Factor

Accessions: T24538 (AthalianaCistrome v4_May2016), Q9FH59 (JASPAR 2024)
Names: AT5G66300, T24538;, VND3, ANAC105, NAC domain-containing protein 105, NC105_ARATH, Protein VASCULAR RELATED NAC-DOMAIN 3
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1, JASPAR 2024 2
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:NAC
Length: 292
Pfam Domains: 13-139 No apical meristem (NAM) protein
Sequence:
(in bold interface residues)
1 MMKVDQDYSCSIPPGFRFHPTDEELVGYYLKKKIASQRIDLDVIREIDLYKIEPWDLQER 60
61 CRIGYEEQTEWYFFSHRDKKYPTGTRTNRATVAGFWKATGRDKAVYLNSKLIGMRKTLVF 120
121 YRGRAPNGQKSDWIIHEYYSLESHQNSPPQEEGWVVCRAFKKRTTIPTKRRQLWDPNCLF 180
181 YDDATLLEPLDKRARHNPDFTATPFKQELLSEASHVQDGDFGSMYLQCIDDDQFSQLPQL 240
241 ESPSLPSEITPHSTTFSENSSRKDDMSSEKRITDWRYLDKFVASQFLMSGED
Interface Residues: 81, 86, 88, 97, 99, 101, 121, 125, 126, 127, 130
3D-footprint Homologues: 7xp3_B, 3swp_A
Binding Motifs: M0690 CkTraarwwsAAGCAA
M0692 CkTraarwwsAAGCAAy
MA2053.1 / UN0382.1 hwcAAGCAACcww
MA2053.2 cAAGCAACc
Binding Sites: UN0382.1.2
MA2053.1.6 / UN0382.1.9
MA2053.1.9 / UN0382.1.12
MA2053.1.2 / UN0382.1.3
MA2053.1.3 / UN0382.1.4
MA2053.1.4 / UN0382.1.5
MA2053.1.7 / UN0382.1.10
MA2053.1.8 / UN0382.1.11
UN0382.1.7
MA2053.1.1 / UN0382.1.1
MA2053.1.10 / UN0382.1.13
MA2053.1.11 / UN0382.1.14
MA2053.1.12 / UN0382.1.15
MA2053.1.13 / UN0382.1.16
MA2053.1.14 / UN0382.1.17
MA2053.1.15 / UN0382.1.18
MA2053.1.16 / UN0382.1.19
MA2053.1.17 / UN0382.1.20
UN0382.1.6
MA2053.1.5 / UN0382.1.8
MA2053.1.18
MA2053.1.19
MA2053.1.20
MA2053.2.14
MA2053.2.1
MA2053.2.10
MA2053.2.11
MA2053.2.12
MA2053.2.13
MA2053.2.15
MA2053.2.16
MA2053.2.17
MA2053.2.18
MA2053.2.19
MA2053.2.2 / MA2053.2.4
MA2053.2.20
MA2053.2.3
MA2053.2.5
MA2053.2.6
MA2053.2.7
MA2053.2.8
MA2053.2.9
Publications: Lindemose S, Jensen MK, Van de Velde J, O'Shea C, Heyndrickx KS, Workman CT, Vandepoele K, Skriver K, De Masi F. A DNA-binding-site landscape and regulatory network analysis for NAC transcription factors in Arabidopsis thaliana. Nucleic Acids Res 42:7681-93 (2014). [Pubmed]
Related annotations: PaperBLAST

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