Transcription Factor
| Accessions: | T11242 (AthalianaCistrome v4_May2016) |
| Names: | At2g33710, T11242; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 231 |
| Pfam Domains: | 70-119 AP2 domain |
| Sequence: (in bold interface residues) | 1 MHSGKRPLSPESMAGNREEKKELCCCSTLSESDVSDFVSELTGQPIPSSIDDQSSSLTLQ 60 61 EKSNSRQRNYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHK 120 121 AKLNFPEHIRVNPTQLYPSPATSHDRIIVTPPSPPPPIAPDILLDQYGHFQSRSSDSSAN 180 181 LSMNMLSSSSSSLNHQGLRPNLEDGENVMTTISTEDDRRRQQHASPDRPIK |
| Interface Residues: | 74, 76, 77, 78, 82, 84, 86, 91, 93, 95 |
| 3D-footprint Homologues: | 7wq5_A, 1gcc_A, 5wx9_A, 7et4_D |
| Binding Motifs: | M0050 ccdcCkCCGCCGymr M0021 dcCGCCGCCGymwyhkym |
| Related annotations: | PaperBLAST |
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