Transcription Factor
| Accessions: | T049481_1.02 (CISBP 1.02) |
| Names: | T049481_1.02;, Zic3 |
| Organisms: | Mus musculus |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 246 |
| Pfam Domains: | 47-65 C2H2-type zinc finger 76-101 Zinc finger, C2H2 type 80-101 C2H2-type zinc finger 94-119 Zinc-finger double domain 107-131 Zinc finger, C2H2 type 107-131 C2H2-type zinc finger 123-150 Zinc-finger double domain 137-161 C2H2-type zinc finger 155-178 Zinc-finger double domain 167-189 Zinc finger, C2H2 type 167-187 Zinc-finger of C2H2 type 167-189 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MNMNMGVNVAAHHGPGAFFRYMRQPIKQELSCKWIEEAQLSRPKKSCDRTFSTMHELVTH 60 61 VTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFAR 120 121 SENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKPYICKVCDKSYTHPS 180 181 SLRKHMKVHESQGSDSSPAASSGYESSTPPAIASANSKDTTKTPSAVQTSTSHNPGLPPN 240 241 FNEWYV |
| Interface Residues: | 21, 22, 23, 53, 55, 56, 59, 89, 90, 91, 92, 93, 95, 96, 100, 107, 119, 120, 121, 122, 123, 125, 126, 128, 129, 132, 149, 150, 151, 152, 153, 154, 155, 156, 157, 160, 177, 178, 179, 180, 181, 182, 183, 184, 185 |
| 3D-footprint Homologues: | 5v3j_F, 5yel_A, 1ubd_C, 7w1m_H, 8cuc_F, 1tf3_A, 7n5w_A, 1tf6_A, 5ei9_F, 6ml4_A, 8ssq_A, 8ssu_A, 5kkq_D, 4x9j_A, 2gli_A, 8h9h_G, 7ysf_A, 5k5i_A, 6e94_A, 2lt7_A, 8gn3_A, 2kmk_A, 3uk3_C, 7y3l_A, 6jnm_A, 7txc_E, 1g2f_F, 6blw_A, 1llm_D, 6u9q_A, 5kl3_A, 7y3m_I, 6a57_A, 2jpa_A, 2wbs_A, 5yj3_D, 1f2i_J, 4m9v_C, 2drp_D |
| Binding Motifs: | M0441_1.02 crcagsrgGr |
| Related annotations: | PaperBLAST |
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