Transcription Factor
| Accessions: | T15028 (AthalianaCistrome v4_May2016), Q8GXR6 (JASPAR 2024) |
| Names: | AT3G58630, T15028;, Q8GXR6_ARATH, Sequence-specific DNA binding transcription factor, Uncharacterized protein At3g58630, Uncharacterized protein At3g58630/F14P22_220 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix |
| Length: | 321 |
| Pfam Domains: | 23-126 Myb/SANT-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MDTVNDSFSPGSSRPSPATLSREDCWSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVAN 60 61 AVNDRHYNTGRNVSAAKSQPYRTDVQCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFF 120 121 SALDDLLRESFPTSSNPDSTDNIPHQRLSLPMSINPVPVAPRSAIPRRPATSPAIIPHAG 180 181 DDLLGFRGNLNAFAAAAAAAACPASEDDSEGSRSRSSGRSGSNKKRERKIEKKQGYKEVA 240 241 DAIERLGQIYERVEEKKRKEMVELEKQRMRFAKELECHRMQLFTEMQVRLHKLRRTSGSK 300 301 GPTSSASAALDYGMMDFPSYF |
| Interface Residues: | 76, 77, 81, 83, 85, 88, 89, 92, 99 |
| 3D-footprint Homologues: | 1flo_A, 3osg_A |
| Binding Motifs: | M0782 ahwtCTCCGGCGAcr M0783 awwtYTCCGGCGacr UN0391.1 ygTCGCCGGAGawdt UN0391.2 TCGCCGGAGa |
| Related annotations: | PaperBLAST |
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