Transcription Factor

						

			
Accessions: Q4H3U3 (JASPAR 2024)

			
Names: Q4H3U3_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3U3
Length: 440
Pfam Domains:    25-202 T-box
Sequence: 
(in bold interface residues)		   1 MTSSDSKLAGMTSSESIETCAVKMALIEHGLWSRFHAFVNEMIVTKNGRRMFPVLKTSIT   60
  61 GLDPTAMYSVMLDFVPVDNNRWKYVNGEWIPGGKPEPHVSSCAYIHPDSPNFGSHWMKQP  120
 121 VGFSRVKLTNKATGNPQQIMLNSLHKYEPRIHIMRVGGAESQQVVASHSFQETRFIAVTA  180
 181 YQNEDVTSLKIKYNPFAKAFLDAKESRSGSENYFKDSTKAGSSQNYSRANTWTANQSNPT  240
 241 FNQCQYESGIPPFHYPIPNQPKTTRERRMSRTQRSHPYKPSTTQIYQDFQPTNYPALPND  300
 301 QWQSSIEGHELDEGHFSLEPVSVDDVTALGFDTPHQGFATNDLLSIEPSYSLDYPQFTTT  360
 361 WSYPTNHMPGYVSNSPIRSLEQPEYFYRGYDVSQQNYVTMTSADVSNVTSSLYETPSPGV  420
 421 MQRPQEDFSIAYTPLTPPSL
Interface Residues: 49, 179, 180, 196, 199, 200
3D-footprint Homologues: 1xbr_B, 6f59_B, 2x6v_A, 4a04_B, 1h6f_B, 5flv_I
Binding Motifs: MA1846.1 mrcrcrtAgGTGTGAawtttsg
MA1846.2 AgGTGTGA
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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