Transcription Factor
| Accessions: | T098565_1.02 (CISBP 1.02), Q9VDH9 (JASPAR 2024) |
| Names: | CG15696, T098565_1.02;, Q9VDH9_DROME |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q9VDH9 |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 179 |
| Pfam Domains: | 97-151 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSDFSIEYILNRAGDRYVGTNASLGVLQRLRASLPFHPYAHPASYVSKESGGSPPASAAE 60 61 AQIPVYDWLQYTRYHPPKLPRALRQNAPAKRTPGRLPRIPFTPQQLQALENAYKESNYLS 120 121 AEDANKLADSLELTNTRVKIWFQNRRARERREKREKDESCDSTFSSNASSPEPEMIVVT |
| Interface Residues: | 42, 43, 44, 47, 48, 91, 95, 96, 97, 98, 136, 137, 139, 140, 143, 144, 147, 148, 150, 151 |
| 3D-footprint Homologues: | 3d1n_M, 3a01_E, 1ig7_A, 1puf_A, 6a8r_A, 3cmy_A, 1fjl_B, 5zfz_A, 2lkx_A, 1nk2_P, 1zq3_P, 2ld5_A, 2hos_A, 5zjt_E, 4cyc_A, 2d5v_B, 5hod_A, 1jgg_B, 2h1k_B, 7psx_B, 5jlw_D, 3lnq_A, 6es3_K, 4xrs_G, 2hdd_A, 7q3o_C, 3rkq_B, 2r5y_A, 6m3d_C, 1b72_A, 5flv_I, 7xrc_C, 2xsd_C, 1e3o_C, 1au7_A, 1le8_A, 1o4x_A, 1le8_B, 6wig_A, 1du0_A, 3l1p_A, 8g87_X, 4qtr_D, 1mnm_C, 1puf_B, 1k61_B |
| Binding Motifs: | MA0176.1 TTaATTr M1102_1.02 ryyaAThaa |
| Binding Sites: | MA0176.1.18 MA0176.1.11 MA0176.1.1 MA0176.1.10 MA0176.1.12 MA0176.1.13 MA0176.1.14 MA0176.1.15 MA0176.1.16 MA0176.1.17 MA0176.1.19 MA0176.1.2 MA0176.1.20 MA0176.1.3 MA0176.1.4 MA0176.1.5 MA0176.1.6 MA0176.1.7 MA0176.1.8 MA0176.1.9 |
| Publications: | Noyes M.B, Meng X, Wakabayashi A, Sinha S, Brodsky M.H, Wolfe S.A. A systematic characterization of factors that regulate Drosophila segmentation via a bacterial one-hybrid system. Nucleic acids research 36:2547-60 (2008). [Pubmed] |
| Related annotations: | PaperBLAST |
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