Transcription Factor

						

			
Accessions: T144630_1.02 (CISBP 1.02)

			
Names: Sox13, T144630_1.02;
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Sox
Length: 504
Pfam Domains:   397-465 HMG (high mobility group) box
  398-458 Domain of unknown function (DUF1898)
Sequence: 
(in bold interface residues)		   1 MVNCTIKSEEKKEPCHEAPQGAAPAVETQPGDPALASQDATNAKAPPQDCASPESSGSPE   60
  61 PKRPAASEAASGSQERLDFNRNLQEVVPAIEKLLSSDWKERFLGRSNVEAKDVKGTQESL  120
 121 AEKELQLLVMIHQLSALRDQLLTAHSEQKNMAAMLFEKQQQQMELARQQQEQIAKQQQQL  180
 181 IQQQHKINLLQQQIQVNMPYVMIPAFPPSHQPLPVTPDSQLALPIQPIPCKPVEYPLQLL  240
 241 HSPPAPVVKRSGVAAHHPLQEPPQPLNLTAKPKVPELPNTSSSPSLKMNSCGPRPASHGA  300
 301 PTRDLQSSPPSLPLGFLGEGDAVTKAIQDARQLLHSHSGALENSPNTPFRKDLISLDSSP  360
 361 AKERLEESCVHPLEEAMLSCDMDGSRHFSESRNSSHIKRPMNAFMVWAKDERRKILQAFP  420
 421 DMHNSSISKILGSRWKSMTNQEKQPYYEEQARLSRQHLEKYPDYKYKPRPKRTCVVEGRR  480
 481 LRVGEYKALMRTRRQGARQSYTIP
Interface Residues: 399, 402, 404, 405, 408, 412, 423, 424, 425, 428, 466
3D-footprint Homologues: 2lef_A, 4y60_C, 1o4x_B, 3f27_D, 6jrp_D, 1qrv_A, 3u2b_C, 7m5w_A, 2gzk_A, 4s2q_D, 1j5n_A, 1hry_A
Binding Motifs: M1603_1.02 rAACAATw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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