Transcription Factor
Accessions: | T082147_1.02 (CISBP 1.02) |
Names: | FOXG1, T082147_1.02; |
Organisms: | Oryzias latipes |
Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
Notes: | experiment type:PBM, family:Forkhead |
Length: | 339 |
Pfam Domains: | 32-127 Fork head domain |
Sequence: (in bold interface residues) | 1 AEEKDKQEEKKDGKDGDAPEKDGEKKSGKYEKPPFSYNALIMMAIRQSPEKRLTLNGIYE 60 61 FIMKNFPYYRENKQGWQNSIRHNLSLNKCFVKVPRHYDDPGKGNYWMLDPSSDDVFIGGT 120 121 TGKLRRRSTTSRAKLAFKRGARLTSGLTFMDRAGSLYWPMSPFLSLHHTRAGGALGYNGT 180 181 SSGYPGHPMSYSTMLTQNMSSNHSSFPSSNGLSMDRLVGGDLPYATHHLTAAALAASAVP 240 241 CGLSVPCSGTTYSLNPCSVNLLAGQTSYFFPHVPHPSMTPQSGAGGGSPQAPSSSSLQCD 300 301 SLRPALSGSLPAFSSGLSGGLSDYFTHQNQGSTPNPLIH |
Interface Residues: | 25, 27, 29, 72, 75, 77, 78, 79, 81, 82, 83, 85, 86, 95, 102, 127 |
3D-footprint Homologues: | 7yz7_A, 7yzb_A, 7yzg_A, 3l2c_A, 7vox_H, 2hdc_A, 2c6y_A, 7tdw_A, 3g73_A, 6el8_A, 7tdx_A, 6nce_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 3qrf_G |
Binding Motifs: | M0738_1.02 rTAAACAa |
Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.