Transcription Factor
| Accessions: | T037184_1.02 (CISBP 1.02) |
| Names: | mnm-2, T037184_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 249 |
| Pfam Domains: | 164-179 Zinc-finger double domain 168-188 C2H2-type zinc finger 168-188 Zinc-finger of C2H2 type 168-190 Zinc finger, C2H2 type 168-190 C2H2-type zinc finger 185-206 Zinc-finger double domain 196-218 Zinc finger, C2H2 type 196-218 C2H2-type zinc finger 196-206 C2H2-type zinc finger 210-234 Zinc-finger double domain 224-246 C2H2-type zinc finger 224-246 Zinc finger, C2H2 type 224-246 Zinc-finger of C2H2 type 224-246 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MSVEASRTCFLIDSLLNKKPKEELETEEEDEEEDEEEELSSSEVTSENDMETESASSSAS 60 61 SVGQPKPDFSAFHKIFSNLDFAKLAAVKRNGHHQPMLFRPECFFPLELSKHLHLVQQTFQ 120 121 MNVLQNLGHTLPLPFVPMLKNVAPAQKRLNNKRASYVDHSQKGNLKKYRCDVCDKTFSRS 180 181 NTLITHKRIHTGEKPFKCEHCGRAFRQPGNLTRHRLTHTTVKPYVCGLCDKAFNRASNLH 240 241 THMRTHTNV |
| Interface Residues: | 118, 121, 145, 146, 147, 148, 150, 151, 154, 168, 178, 179, 180, 181, 182, 184, 185, 187, 188, 189, 191, 205, 206, 207, 208, 209, 210, 212, 213, 214, 217, 234, 235, 236, 237, 238, 239, 240, 241, 242, 244, 245 |
| 3D-footprint Homologues: | 8ssq_A, 7w1m_H, 5yel_A, 8ssu_A, 7ysf_A, 2lt7_A, 2kmk_A, 7n5w_A, 6jnm_A, 3uk3_C, 6ml4_A, 1tf3_A, 8cuc_F, 7y3l_A, 5kkq_D, 1tf6_A, 5ei9_F, 1g2f_F, 5kl3_A, 1ubd_C, 5k5i_A, 1llm_D, 6blw_A, 5k5l_F, 6u9q_A, 4x9j_A, 2gli_A, 1f2i_J, 8h9h_G, 5v3j_F, 6e94_A, 7y3m_I, 6a57_A, 2jpa_A, 2wbs_A, 8gn3_A, 5yj3_D, 7txc_E, 2drp_D, 4m9v_C |
| Binding Motifs: | M0381_1.02 arkgAwvyGy |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.