Transcription Factor
| Accessions: | UP00102A (UniPROBE 20160601) |
| Names: | odd-paired homolog, Zic1, Zinc finger protein of the cerebellum 1, Zinc finger protein ZIC 1, ZNF201 |
| Organisms: | Mus musculus |
| Libraries: | UniPROBE 20160601 1 1 Hume MA, Barrera LA, Gisselbrecht SS, Bulyk ML. UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions. Nucleic Acids Res : (2015). [Pubmed] |
| Uniprot: | P46684 |
| Description: | Zinc finger protein of the cerebellum 1: Mus musculus similar to zic protein member 1 (Zic1), mRNA |
| Length: | 178 |
| Pfam Domains: | 20-38 C2H2-type zinc finger 53-74 Zinc finger, C2H2 type 53-74 C2H2-type zinc finger 67-92 Zinc-finger double domain 80-104 C2H2-type zinc finger 80-104 Zinc finger, C2H2 type 96-123 Zinc-finger double domain 110-134 Zinc finger, C2H2 type 110-134 C2H2-type zinc finger 128-151 Zinc-finger double domain 140-162 Zinc finger, C2H2 type 140-162 C2H2-type zinc finger 141-160 Zinc-finger of C2H2 type |
| Sequence: (in bold interface residues) | 1 QELICKWIEPEQLANPKKSCNKTFSTMHELVTHVTVEHVGGPEQSNHICFWEECPREGKP 60 61 FKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPFKCEFEGCDRR 120 121 FANSSDRKKHMHVHTSDKPYLCKMCDKSYTHPSSLRKHMKVHESPSQGSQPSPAASSG |
| Interface Residues: | 26, 27, 28, 32, 62, 63, 64, 65, 66, 68, 69, 73, 92, 93, 94, 95, 96, 98, 99, 100, 101, 102, 104, 105, 108, 122, 123, 124, 125, 126, 127, 128, 129, 130, 133, 150, 151, 152, 153, 154, 155, 156, 157, 158 |
| 3D-footprint Homologues: | 5v3j_F, 1ubd_C, 7w1m_H, 8cuc_F, 7n5w_A, 1tf3_A, 2gli_A, 8ssq_A, 1tf6_A, 8ssu_A, 6ml4_A, 4x9j_A, 8gn3_A, 5kkq_D, 5ei9_F, 7eyi_G, 6e94_A, 7ysf_A, 6wmi_A, 5k5i_A, 2i13_A, 5und_A, 2lt7_A, 3uk3_C, 6jnm_A, 7y3l_A, 5kl3_A, 1g2f_F, 1llm_D, 2v6e_B, 1mey_C, 6blw_A, 6u9q_A, 5yel_A, 2kmk_A, 8h9h_G, 7y3m_I, 6a57_A, 2jpa_A, 5yj3_D, 5k5l_F, 2wbs_A, 1f2i_J, 7txc_E, 4m9v_C, 2drp_D |
| Binding Motifs: | UP00102A_1 smCCCCcgGGGGGg UP00102A_2 ymdCrCAGCAkGmrw |
| Binding Sites: | ACAGCAGG ACAGCGGG ACCCCCCA ACCCCCCG ACCCCCTG CACAGCGG CAGCGGGA CAGCGGGG CATGGGGG CCACGGGG CCAGGGGG CCCCCCGC CCCCCCGG CCCCGCGG CCCCGGGG CGGGGGGC GACCCCCC GGACCCCC GGCCCCCC GGGGGGTA |
| Publications: | Badis G, Berger M.F, Philippakis A.A, Talukder S, Gehrke A.R, Jaeger S.A, Chan E.T, Metzler G, Vedenko A, Chen X, Kuznetsov H, Wang C.F, Coburn D, Newburger D.E, Morris Q, Hughes T.R, Bulyk M.L. Diversity and complexity in DNA recognition by transcription factors. Science (New York, N.Y.) 324:1720-3 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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