Transcription Factor
| Accessions: | T098538_1.02 (CISBP 1.02) |
| Names: | Ptx1, T098538_1.02; |
| Organisms: | Drosophila melanogaster |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 679 |
| Pfam Domains: | 435-491 Homeobox domain 627-644 OAR domain |
| Sequence: (in bold interface residues) | 1 MKIFYIDKAVITWPPPSPLQQSADSSVGGSGVRWCGGSVVLLSAHMPHQIPSGALRQPYD 60 61 LRRQLKESQFTTPFAAGSSIRGINPLTFSGSGNGCILDLLSPQLEDTGLKTTTFLQHFKD 120 121 VVTTKFTGRDHHLPPLHPAHPAHPAHQQSALHHHHHQQQSFSTIFPTYLGMDRSSAVGGC 180 181 GGGGGLGVGVVTSSATALGPGGLTNGGGGVVSGALNGLEAMSAESTGLCLQDLVSAGTAN 240 241 GAGSAGSAESATTTSTALSSGSTGSSTVNGGGSSTSGTEHLHSHHSLHDSSSSVSISPAI 300 301 SSLMPISSLSHLHHSAGQDLVGGYSQHPHHTVVPPHTPKHEPLEKLRIWAETGDFRDSHS 360 361 SMTAVANSLDSTHLNNFQTSSTSSISNRSRDRKDGNRSVNETTIKTENISSSGHDEPMTT 420 421 SGEEPKNDKKNKRQRRQRTHFTSQQLQELEHTFSRNRYPDMSTREEIAMWTNLTEARVRV 480 481 WFKNRRAKWRKRERNAMNAAVAAADFKSGFGTQFMQPFADDSLYSSYPYNNWTKVPSPLG 540 541 TKPFPWPVNPLGSMVAGNHHQNSVNCFNTGASGVAVSMNNASMLPGSMGSSLSNTSNVGA 600 601 VGAPCPYTTPANPYMYRSAAEPCMSSSMSSSIATLRLKAKQHASAGFGSPYSAPSPVSRS 660 661 NSAGLSACQYTGVGVTDVV |
| Interface Residues: | 425, 434, 435, 436, 437, 438, 440, 476, 477, 479, 480, 483, 484, 487, 488, 491, 492, 521 |
| 3D-footprint Homologues: | 5zfz_A, 4j19_B, 1ig7_A, 2h1k_B, 6m3d_C, 1puf_A, 6a8r_A, 3cmy_A, 3d1n_M, 1fjl_B, 6fqp_B, 3lnq_A, 1jgg_B, 2lkx_A, 1nk2_P, 1zq3_P, 2ld5_A, 6es3_K, 7q3o_C, 5zjt_E, 3a01_E, 5hod_A, 2h8r_B, 1mnm_C, 7psx_B, 5jlw_D, 3rkq_B, 1puf_B, 1au7_A, 4xrs_G, 2hdd_A, 4cyc_A, 2r5y_A, 1b72_A, 5flv_I, 3l1p_A, 2hos_A, 1le8_B, 1k61_B, 1e3o_C, 1le8_A, 1du0_A, 4qtr_D, 1o4x_A, 8g87_X |
| Binding Motifs: | M1099_1.02 yTAATCccy |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.