Transcription Factor
| Accessions: | ZNF385D (HT-SELEX2 May2017) |
| Names: | ENSG00000151789, ZNF385D |
| Organisms: | Homo sapiens |
| Libraries: | HT-SELEX2 May2017 1 1 Yin Y, Morgunova E, Jolma A, Kaasinen E, Sahu B, Khund-Sayeed S, Das PK, Kivioja T, Dave K, Zhong F, Nitta KR, Taipale M, Popov A, Ginno PA, Domcke S, Yan J, Schübeler D, Vinson C, Taipale J. Impact of cytosine methylation on DNA binding specificities of human transcription factors. Science : (2017). [Pubmed] |
| Notes: | TF family: Znf_U1 experiment: HT-SELEX Hamming distance: 1 cycle: 3, TF family: Znf_U1 experiment: Methyl-HT-SELEX Hamming distance: 1 cycle: 3 |
| Length: | 247 |
| Pfam Domains: | 21-44 Zinc-finger of C2H2 type 138-174 C2H2 type zinc-finger (2 copies) 144-168 Zinc-finger of C2H2 type 205-236 C2H2 type zinc-finger (2 copies) 207-231 Zinc-finger of C2H2 type 207-232 Zinc-finger double-stranded RNA-binding |
| Sequence: (in bold interface residues) | 1 KAVINHTFGVPLPHRRKQIISCNICQLRFNSDSQAAAHYKGTKHAKKLKALEAMKNKQKS 60 61 VTAKDSAKTTFTSITTNTINTSSDKTDGTAGTPAISTTTTVEIRKSSVMTTEITSKVEKS 120 121 PTTATGNSSCPSTETEEEKAKRLLYCSLCKVAVNSASQLEAHNSGTKHKTMLEARNGSGT 180 181 IKAFPRAGVKGKGPVNKGNTGLQNKTFHCEICDVHVNSETQLKQHISSRRHKDRAAGKPP 240 241 KPKYSPY |
| Interface Residues: | 31, 32, 33, 34, 52, 53, 56, 57, 216, 220 |
| 3D-footprint Homologues: | 7eyi_G, 7n5w_A, 8h9h_G, 6rwn_I, 7w1m_H |
| Binding Motifs: | ZNF385D_2 myGTCGCGACrk ZNF385D_methyl_1 yCGTCGCGACGr |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.