Transcription Factor
| Accessions: | Carub.0007s0775.1.p (EEADannot 2026-03-04) |
| Names: | MYB3R-1 |
| Organisms: | Capsella rubella |
| Libraries: | EEADannot 2026-03-04 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:Tryptophan cluster factors MYB |
| Length: | 990 |
| Pfam Domains: | 35-81 Myb-like DNA-binding domain 38-96 Myb-like DNA-binding domain 87-133 Myb-like DNA-binding domain 90-147 Myb-like DNA-binding domain 139-181 Myb-like DNA-binding domain 142-187 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MKREMKAPIIPPEGFQSELKGKHGRTSGPARRSTKGQWTPEEDEVLCKAVERFQGKNWKK 60 61 IAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDNTIIALVERYGAKKWSTISQHLPGR 120 121 IGKQCRERWHNHLNPLINKNAWTQEEELTLIRAHQIYGNKWAELMKLLPGRSDNSIKNHW 180 181 NSSVKKKLDSYYASGLLDQCQSSPLIALQNKSIASSSSWMYSSGDEGNSRAGVDAEESEC 240 241 SQASTVFSQSTNDLQEEVKPGNEEFYMPEFHSRAEHQISNDAEPYYPSFEEVKIVVPEIS 300 301 CEAECSKKFQNLTCSHEVRTTTATEDQLQGMSNEAKQDPDLDLLTDNMDNDGKNQAHRQA 360 361 FQSSGRLSEQPSLPNSDTDPEAQTLITDEECCRVLFPDTMKDSCTSSIKQGRNMIDPRKG 420 421 KGCLCSQSVESHAHETGKLPALSRHPSSSEVQAGHNCVPLSDSDLKDPVLLRNDSNPPIQ 480 481 GSHLFGATELECKTVTNDSFIDTDGHVTSHGNDNDGIEQHGLSYIPKDSLKLVPLNSFSS 540 541 PSRVNRIYFPIDDKPAEKDKGALCYEPPRFPSADIPFFSCDLVPSNSDLRQEYSPFGIRQ 600 601 LMISSMNCTTPLRLWDSPCHERSPDVMLNDATKSLSNAPSILKKRHRDLLSPVLDRRKDK 660 661 KLKRAATSSLAKDLSCLDVMLDGGDDCMSTRPSESPENKNRHASPSKAKDNRYSASGWSD 720 721 QEMIPIDEEPKETLKLGGVTSMQNQKGCNEGGASAKNDQETSGTFVEIQLCSPGMTGGRS 780 781 DNKVNTSAKDLSNQHKRSLADIPTEEISPELPCTVDSSPLSAIDKTNTTETSFDIENFNI 840 841 FDGTPYRKLLDTPSPWKSPLLFGSFLQSPKLPPEVTFEDIGCFMSPGERSYDAIGLMKHL 900 901 SEHSATAYADALEVLGNDTPETILKKRQLNKSIQGKENQHHPHDQLGNRSQVERRTLDFS 960 961 DCGTPGKSTVSSAPPGGYSSPSSYLLKSCR |
| Interface Residues: | 35, 70, 71, 74, 75, 78, 79, 87, 121, 122, 123, 124, 126, 127, 130, 131, 132, 173, 174, 177, 178, 181, 182, 183 |
| 3D-footprint Homologues: | 7c4r_A, 1w0t_A, 5eyb_B, 7xur_A, 1vfc_A, 3osg_A, 2kdz_A, 3zqc_A, 6kks_A, 1mse_C |
| Binding Motifs: | EEAD0617 AACGGYyAyww |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.