Transcription Factor
| Accessions: | T22381 (AthalianaCistrome v4_May2016), Q9LTK3 (JASPAR 2024) |
| Names: | AT5G52170, HDG7, T22381;, HD-ZIP protein HDG7, HDG7_ARATH, Homeobox-leucine zipper protein HDG7, Homeodomain GLABRA 2-like protein 7, Homeodomain transcription factor HDG7, Protein HOMEODOMAIN GLABROUS 7 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:HB |
| Length: | 682 |
| Pfam Domains: | 59-113 Homeobox domain 224-426 START domain |
| Sequence: (in bold interface residues) | 1 MNGDLEVDMSRGDFNPSFFLGKLKDDEFESRSLSDDSFDAMSGDEDKQEQRPKKKKRKTK 60 61 YHRHTSYQIQELESFFKECPHPNEKQRLELGKKLTLESKQIKFWFQNRRTQMKTQLERHE 120 121 NVILKQENEKLRLENSFLKESMRGSLCIDCGGAVIPGEVSFEQHQLRIENAKLKEELDRI 180 181 CALANRFIGGSISLEQPSNGGIGSQHLPIGHCVSGGTSLMFMDLAMEAMDELLKLAELET 240 241 SLWSSKSEKGSMNHFPGSRETGLVLINSLALVETLMDTNKWAEMFECIVAVASTLEVISN 300 301 GSDGSRNGSILLMQAEFQVMSPLVPIKQKKFLRYCKQHGDGLWAVVDVSYDINRGNENLK 360 361 SYGGSKMFPSGCIIQDIGNGCSKVTWIEHSEYEESHTHSLYQPLLSSSVGLGATKWLATL 420 421 QRQCESFTMLLSSEDHTGLSHAGTKSILKLAQRMKLNFYSGITASCIHKWEKLLAENVGQ 480 481 DTRILTRKSLEPSGIVLSAATSLWLPVTQQRLFEFLCDGKCRNQWDILSNGASMENTLLV 540 541 PKGQQEGSCVSLLRAAGNDQNESSMLILQETWNDVSGALVVYAPVDIPSMNTVMSGGDSA 600 601 YVALLPSGFSILPDGSSSSSDQFDTDGGLVNQESKGCLLTVGFQILVNSLPTAKLNVESV 660 661 ETVNNLIACTIHKIRAALRIPA |
| Interface Residues: | 55, 56, 57, 58, 60, 61, 62, 63, 99, 100, 102, 103, 106, 107, 110, 111, 113, 114 |
| 3D-footprint Homologues: | 3cmy_A, 3d1n_M, 1fjl_B, 2h1k_B, 1nk2_P, 5zjt_E, 2ld5_A, 2r5y_A, 1puf_B, 3l1p_A, 2lkx_A, 1mnm_C, 1puf_A, 6es3_K, 7q3o_C, 1k61_B, 5jlw_D, 1ig7_A, 1e3o_C, 2xsd_C, 1au7_A, 4j19_B, 1le8_A, 7xrc_C, 4qtr_D, 2hdd_A, 6wig_A, 1du0_A, 5hod_A, 3rkq_B, 8g87_X, 1jgg_B, 6a8r_A, 4xrm_B, 7psx_B, 4cyc_A, 1zq3_P, 4xrs_G, 1o4x_A, 5zfz_A, 3a01_E, 1b72_A, 5flv_I, 3lnq_A, 2hos_A, 6m3d_C |
| Binding Motifs: | M0423 ryAwTTAATGh MA1757.1 dCATTAAwTry MA1757.2 dCATTAAwTr |
| Publications: | Nakamura M., Katsumata H., Abe M., Yabe N., Komeda Y., Yamamoto K. T., Takahashi T. Characterization of the class IV homeodomain-Leucine Zipper gene family in Arabidopsis.. Plant Physiol. 141:1363-1375 (2006). [Pubmed] |
| Related annotations: | PaperBLAST |
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