Transcription Factor

						

			
Accessions: T137030_1.02 (CISBP 1.02)

			
Names: C_scaffold_35000005, T137030_1.02;
Organisms: Phytophthora ramorum
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Pipsqueak
Length: 797
Pfam Domains:   649-755 PCI domain
Sequence: 
(in bold interface residues)		   1 MSRSRSCAASVRRYLSEAGEKEALRVLREQLHRQRRVTSDDVRLAVRAVASQGGTVPVPS   60
  61 DFPPTRWVLEFKRIHGFVQFNSFAFGAAASGGVKEVFGLPTRLEVPPLRSAAPLSVVTGR  120
 121 TTSSERESNSQTSSNGKRSSNARGSVAQVTSSSLSSGNSSDDEKEPSEDRRSSALEIVAA  180
 181 AATGLRLDSEAQRQMQLQHGFSQRHRQFLQQQQRRAMLVEERRQNVATWPTSETVGHGEM  240
 241 RSIASYDSLESENGIGPGSDDRRVSSLPSYILHRVGNNGSVTDDMQSNASSNNDKRGYKL  300
 301 SHTVPAETWEKAIAAVEQQGMSLRAAAKMFGVHFAALHRRVKKRARGGLAKGNNGYFHPS  360
 361 DEAGIMRVVVARAELGVLMTFDELMRLVEAAALRKLPDISDPIPNSTEEQPAATAMDFIA  420
 421 QEQAAYPDIAQRYQKLKDLHVRKLYHELTGELEAFVRDPMCHKYPLNLPKLYQEFIRIFQ  480
 481 DKLNQIRLVVICTEISTQFADPAKAQEFMEQLLSQLSTKTAHEAVLLCKMQIAQLKFRRG  540
 541 AEFLVEVKATVDDDKQVVESLVGAEPVVHASYYRVACDYYGAVGPADKFYKNALMFLAYT  600
 601 QYDEMRPDERFDLAVNISIAALTGDGVFNFGEVLATPILRALEGTDKQWLSDLLHAFNKG  660
 661 DIDRFNEIVGQNSKEFNAQPALVSKQEYVKEKVALLALMVLVFKRPSHERNIPFHEIAEA  720
 721 TRLPLEQVEWLVMRALSCKLIKGTIDQVDAIVRVTWVQPRVLDNSQLQELVSRLDGWEKK  780
 781 VNSTLLYVEEQTPELFQ
Interface Residues: 258, 259, 263, 477
3D-footprint Homologues: 8gh8_C, 7ckq_G
Binding Motifs: M1512_1.02 yTGTtacrct
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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